Build failed in Jenkins: PhenoTips #1091

PhenoTips Jenkins ci at phenotype.ccm.sickkids.ca
Tue Dec 18 20:06:59 EST 2018


See <https://ci.phenotips.org/job/PhenoTips/1091/display/redirect>

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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for PhenoTips - Parent POM 1.4-SNAPSHOT:
[INFO] 
[INFO] PhenoTips - Parent POM ............................. SUCCESS [  6.127 s]
[INFO] PhenoTips - Resource packages ...................... SUCCESS [  1.472 s]
[INFO] PhenoTips - Jetty .................................. SUCCESS [  1.471 s]
[INFO] PhenoTips - Jetty Lifecycle Listener - Log Writer .. SUCCESS [ 10.702 s]
[INFO] PhenoTips - Jetty Lifecycle Listener - Open Browser  SUCCESS [  4.800 s]
[INFO] PhenoTips - Jetty Resources ........................ SUCCESS [  2.785 s]
[INFO] PhenoTips - Solr configuration files ............... SUCCESS [ 12.313 s]
[INFO] PhenoTips - Various Java components ................ SUCCESS [  1.707 s]
[INFO] PhenoTips - Default administrative account and default rights SUCCESS [  2.699 s]
[INFO] PhenoTips - Various utilities ...................... SUCCESS [  1.570 s]
[INFO] PhenoTips - Joda Time Script Service ............... SUCCESS [  5.743 s]
[INFO] PhenoTips - UI Widgets ............................. SUCCESS [  1.643 s]
[INFO] PhenoTips - UI Widgets - Documents providing various widgets SUCCESS [ 11.616 s]
[INFO] PhenoTips - Skin ................................... SUCCESS [  1.690 s]
[INFO] PhenoTips - Skin - Documents providing the custom Skin SUCCESS [  8.497 s]
[INFO] PhenoTips - General navigation ..................... SUCCESS [  1.685 s]
[INFO] PhenoTips - Navigation - Java APIs ................. SUCCESS [  2.255 s]
[INFO] PhenoTips - Component Manager Registry ............. SUCCESS [  8.732 s]
[INFO] PhenoTips - OBO to Solr conversion ................. SUCCESS [  6.973 s]
[INFO] PhenoTips - Data model constants ................... SUCCESS [  4.793 s]
[INFO] XWiki Platform - Core - Users - Parent POM ......... SUCCESS [  1.625 s]
[INFO] XWiki Platform - Core - Users - API ................ SUCCESS [  8.770 s]
[INFO] PhenoTips - Security ............................... SUCCESS [  1.593 s]
[INFO] PhenoTips - Security - Authorization APIs .......... SUCCESS [  9.945 s]
[INFO] PhenoTips - Generic Entities APIs .................. SUCCESS [  1.607 s]
[INFO] PhenoTips - Entities - Java APIs ................... SUCCESS [ 22.783 s]
[INFO] PhenoTips - Patient data ........................... SUCCESS [  1.553 s]
[INFO] PhenoTips - Patient data - Java APIs ............... SUCCESS [ 15.318 s]
[INFO] PhenoTips - Vocabularies ........................... SUCCESS [  1.823 s]
[INFO] PhenoTips - Vocabularies - APIs .................... SUCCESS [ 30.985 s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration SUCCESS [  2.155 s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs SUCCESS [ 18.059 s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services SUCCESS [ 17.139 s]
[INFO] PhenoTips - Phenotype suggest service .............. SUCCESS [  1.664 s]
[INFO] PhenoTips - Phenotype suggest service - Java code .. SUCCESS [ 23.214 s]
[INFO] PhenoTips - Phenotype suggest service - Document providing phenotype suggestions SUCCESS [ 10.131 s]
[INFO] PhenoTips - Application configuration .............. SUCCESS [  1.708 s]
[INFO] PhenoTips - Application configuration - Java APIs .. SUCCESS [ 16.315 s]
[INFO] XWiki Translation Manager .......................... SUCCESS [  5.735 s]
[INFO] XWiki - Locks ...................................... SUCCESS [ 14.256 s]
[INFO] PhenoTips - Patient data - Default implementation for the Java APIs SUCCESS [ 27.372 s]
[INFO] PhenoTips - Various Tools .......................... SUCCESS [ 30.237 s]
[INFO] PhenoTips - Patient data - Documents providing the patient class, sheet and display code SUCCESS [ 16.390 s]
[INFO] PhenoTips - Users and Groups ....................... SUCCESS [  4.526 s]
[INFO] PhenoTips - Users and Groups - Wiki Documents ...... SUCCESS [  2.370 s]
[INFO] PhenoTips - Application configuration - Documents providing the configuration classes and their display code SUCCESS [  1.973 s]
[INFO] PhenoTips - Entity access rules .................... SUCCESS [  1.704 s]
[INFO] PhenoTips - Entity access rules - Java APIs ........ SUCCESS [ 23.461 s]
[INFO] PhenoTips - Family Studies ......................... SUCCESS [  1.565 s]
[INFO] PhenoTips - Family Studies - Java APIs ............. SUCCESS [ 50.285 s]
[INFO] PhenoTips - Family Studies - UI .................... SUCCESS [ 10.282 s]
[INFO] PhenoTips - Patient access rules ................... SUCCESS [  1.744 s]
[INFO] PhenoTips - Patient access rules - Wiki Documents .. SUCCESS [  9.701 s]
[INFO] PhenoTips - Navigation - Documents providing the homepage and the All Data page SUCCESS [ 12.019 s]
[INFO] PhenoTips - User - Profile - UI .................... SUCCESS [  6.763 s]
[INFO] PhenoTips - Data export ............................ SUCCESS [  1.557 s]
[INFO] PhenoTips - Data export - Spreadsheet Export APIs .. SUCCESS [ 26.869 s]
[INFO] PhenoTips - Data export - Documents providing the Export functionality SUCCESS [ 11.878 s]
[INFO] PhenoTips - Patient measurements ................... SUCCESS [  1.748 s]
[INFO] PhenoTips - Patient measurements - Java APIs ....... SUCCESS [ 17.418 s]
[INFO] PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI SUCCESS [ 15.301 s]
[INFO] PhenoTips - Consents ............................... SUCCESS [  6.272 s]
[INFO] PhenoTips - Consents - Java APIs ................... SUCCESS [ 27.097 s]
[INFO] PhenoTips - Common code for REST services .......... SUCCESS [ 25.887 s]
[INFO] PhenoTips - Patient Data - REST services ........... SUCCESS [ 25.150 s]
[INFO] PhenoTips - Consents - REST Services ............... SUCCESS [ 18.905 s]
[INFO] PhenoTips - Consents - Frontend sources ............ SUCCESS [ 38.934 s]
[INFO] PhenoTips - Studies ................................ SUCCESS [  6.251 s]
[INFO] PhenoTips - Studies - Java APIs .................... SUCCESS [ 21.819 s]
[INFO] PhenoTips - Studies - Migrations ................... SUCCESS [ 14.973 s]
[INFO] PhenoTips - Studies - Wiki Documents ............... SUCCESS [  9.037 s]
[INFO] PhenoTips - Entities - Documents ................... SUCCESS [  7.711 s]
[INFO] PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code SUCCESS [  2.051 s]
[INFO] PhenoTips - Security - Auditing support ............ SUCCESS [  1.613 s]
[INFO] PhenoTips - Security - Auditing support - Backend code SUCCESS [ 30.732 s]
[INFO] PhenoTips - Patient data sharing ................... SUCCESS [  2.016 s]
[INFO] PhenoTips - Patient data sharing - Communication Protocol Details SUCCESS [  7.967 s]
[INFO] PhenoTips - Patient data sharing - Secure data storage API SUCCESS [ 12.381 s]
[INFO] PhenoTips - Patient data sharing - Push Java APIs .. SUCCESS [ 59.227 s]
[INFO] PhenoTips - Patient data sharing - Push Configuration UI SUCCESS [ 27.050 s]
[INFO] PhenoTips - Users and Groups - Java APIs ........... SUCCESS [ 31.424 s]
[INFO] PhenoTips - Patient data sharing - Receiver Java APIs SUCCESS [01:03 min]
[INFO] PhenoTips - Patient data sharing - Receiver UI ..... SUCCESS [ 11.479 s]
[INFO] PhenoTips - Specificity Meter ...................... SUCCESS [  1.973 s]
[INFO] PhenoTips - Specificity Meter - Documents providing the UI SUCCESS [  6.735 s]
[INFO] PhenoTips - Diagnosis Suggestion Service ........... SUCCESS [  2.283 s]
[INFO] PhenoTips - Diagnosis Suggestion Java Code ......... SUCCESS [ 47.308 s]
[INFO] PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions SUCCESS [  9.397 s]
[INFO] XWiki Platform - SVG tools ......................... SUCCESS [  7.534 s]
[INFO] PhenoTips - Pedigree ............................... SUCCESS [  1.742 s]
[INFO] PhenoTips - Pedigree - Application Documents ....... SUCCESS [ 12.022 s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration SUCCESS [  1.758 s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs SUCCESS [ 42.087 s]
[INFO] PhenoTips - Gene Panels ............................ SUCCESS [  5.637 s]
[INFO] PhenoTips - Gene Panels - APIs ..................... SUCCESS [02:48 min]
[INFO] PhenoTips - Gene Panels - REST services ............ SUCCESS [01:38 min]
[INFO] PhenoTips - Gene Panels - UI ....................... SUCCESS [03:36 min]
[INFO] PhenoTips - Security - Auditing support - Frontend sources SUCCESS [ 43.300 s]
[INFO] PhenoTips - Application interface .................. SUCCESS [05:49 min]
[INFO] PhenoTips - Pedigree - JS and CSS Resources ........ SUCCESS [07:00 min]
[INFO] PhenoTips - UI Widgets - JS and CSS Resources ...... SUCCESS [ 18.776 s]
[INFO] PhenoTips - Base War package ....................... FAILURE [01:56 min]
[INFO] PhenoTips - Utilities - Concurrency locking ........ SKIPPED
[INFO] PhenoTips - NCBI eUtils Services ................... SKIPPED
[INFO] PhenoTips - NCBI eUtils Services - Java APIs ....... SKIPPED
[INFO] PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions SKIPPED
[INFO] PhenoTips - Misc - Support for proxy authentication  SKIPPED
[INFO] PhenoTips - Utilities - XLIFF APIs ................. SKIPPED
[INFO] PhenoTips - Widget - Java APIs ..................... SKIPPED
[INFO] PhenoTips - Skin - Java APIs ....................... SKIPPED
[INFO] PhenoTips - Patient data - Page Objects ............ SKIPPED
[INFO] PhenoTips - Navigation - Testing Page Objects ...... SKIPPED
[INFO] PhenoTips - Family Studies - Data migrations ....... SKIPPED
[INFO] PhenoTips - Family Studies - REST services ......... SKIPPED
[INFO] PhenoTips - Vocabularies - Support for translating vocabularies SKIPPED
[INFO] PhenoTips - Vocabularies - Support for translating vocabularies - XLIFF translations SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Annotations for disease vocabularies SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - French translation SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - German translation SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Italian translation SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Russian translation SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Spanish translation SKIPPED
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration SKIPPED
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs SKIPPED
[INFO] PhenoTips - Vocabularies - REST services ........... SKIPPED
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Online service SKIPPED
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Online service - APIs SKIPPED
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest SKIPPED
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs SKIPPED
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration SKIPPED
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs SKIPPED
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology Integration - WikiPedia HTML parser SKIPPED
[INFO] PhenoTips - Vocabularies - ORDO integration ........ SKIPPED
[INFO] PhenoTips - Vocabularies - ORDO integration - APIs . SKIPPED
[INFO] PhenoTips - Vocabularies - OncoTree integration .... SKIPPED
[INFO] PhenoTips - Vocabularies - OncoTree integration - APIs SKIPPED
[INFO] PhenoTips - Patient data - Data migrations ......... SKIPPED
[INFO] PhenoTips - Patient data - Solr indexing ........... SKIPPED
[INFO] PhenoTips - Extra fields for patient data .......... SKIPPED
[INFO] PhenoTips - Extra fields for patient data - Medication SKIPPED
[INFO] PhenoTips - Extra fields for patient data - Medication - Java APIs SKIPPED
[INFO] PhenoTips - Extra fields for patient data - Medication - Documents providing the medication data class and display code SKIPPED
[INFO] PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components SKIPPED
[INFO] PhenoTips - Easy encryption support ................ SKIPPED
[INFO] PhenoTips - Encrypted XProperty .................... SKIPPED
[INFO] PhenoTips - Security - Auditing support - REST code  SKIPPED
[INFO] PhenoTips - Entity access rules - REST services .... SKIPPED
[INFO] PhenoTips - Patient contacts info .................. SKIPPED
[INFO] PhenoTips - Patient access rules - Java APIs ....... SKIPPED
[INFO] PhenoTips - Patient access rules - Migrations ...... SKIPPED
[INFO] PhenoTips - Patient measurements - Data migrations . SKIPPED
[INFO] XWiki Platform - Core - Users - Wiki ............... SKIPPED
[INFO] PhenoTips - Users and Groups - REST ................ SKIPPED
[INFO] PhenoTips - Application configuration - Data migrations SKIPPED
[INFO] PhenoTips - Storage migrator ....................... SKIPPED
[INFO] PhenoTips - Storage migrators - Java APIs .......... SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments ........ SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - DataBase store SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - Filesystem store SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - Generic migrator SKIPPED
[INFO] PhenoTips - Specificity Meter - Java APIs .......... SKIPPED
[INFO] PhenoTips - Pedigree - Java APIs ................... SKIPPED
[INFO] PhenoTips - Record Locking ......................... SKIPPED
[INFO] PhenoTips - Record Locking - API ................... SKIPPED
[INFO] PhenoTips - Record Locking - UI - Documents providing record locking functionality SKIPPED
[INFO] PhenoTips - Distribution packages .................. SKIPPED
[INFO] PhenoTips - HSQLDB Database ........................ SKIPPED
[INFO] PhenoTips - War package ............................ SKIPPED
[INFO] PhenoTips - Standalone Distribution ................ SKIPPED
[INFO] PhenoTips - DMG Distribution ....................... SKIPPED
[INFO] PhenoTips - RPM Distribution ....................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  45:37 min
[INFO] Finished at: 2018-12-18T20:06:37-05:00
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-deploy-plugin:2.8.2:deploy (default-deploy) on project phenotips-base-war: Failed to deploy metadata: Could not transfer metadata org.phenotips:phenotips-base-war:1.4-SNAPSHOT/maven-metadata.xml from/to nexus.phenotips.org (https://nexus.phenotips.org/nexus/content/repositories/snapshots): Failed to transfer file https://nexus.phenotips.org/nexus/content/repositories/snapshots/org/phenotips/phenotips-base-war/1.4-SNAPSHOT/maven-metadata.xml with status code 400 -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :phenotips-base-war
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