Build failed in Jenkins: patient-network-PR #83

PhenoTips Jenkins ci at phenotype.ccm.sickkids.ca
Mon Nov 19 22:58:58 EST 2018


See <https://ci.phenotips.org/job/patient-network-PR/83/display/redirect>

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[...truncated 118.98 KB...]
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[INFO] Generating package.xml descriptor at [<https://ci.phenotips.org/job/patient-network-PR/ws/ui/target/classes/package.xml]>
[INFO] Building zip: <https://ci.phenotips.org/job/patient-network-PR/ws/ui/target/patient-network-ui.xar>
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[INFO] -----------< org.phenotips:matching-notification-resources >------------
[INFO] Building Phenotips - Patient Network - Matching Notification - JS and CSS Resources 1.1-SNAPSHOT [11/14]
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[JENKINS] Recording test results
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[INFO] Building jar: <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-resources/target/matching-notification-resources-1.1-SNAPSHOT.jar>
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[INFO] --- maven-javadoc-plugin:2.10.4:jar (default-cli) @ matching-notification-resources ---
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[INFO] ---------------< org.phenotips:matching-notification-ui >---------------
[INFO] Building PhenoTips - Patient Network - Matching Notification - UI 1.1-SNAPSHOT [12/14]
[INFO] --------------------------------[ xar ]---------------------------------
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[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ matching-notification-ui ---
[INFO] Deleting <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-ui/target>
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[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ matching-notification-ui ---
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[INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ matching-notification-ui ---
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[INFO] --- xwiki-commons-tool-xar-plugin:7.1.4:xar (default-xar) @ matching-notification-ui ---
[INFO] Generating package.xml descriptor at [<https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-ui/target/classes/package.xml]>
[INFO] Building zip: <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-ui/target/matching-notification-ui.xar>
[INFO] package.xml already added, skipping
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[INFO] --- maven-javadoc-plugin:2.10.4:jar (default-cli) @ matching-notification-ui ---
[INFO] Not executing Javadoc as the project is not a Java classpath-capable package
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[INFO] -----------< org.phenotips:matching-notification-migrations >-----------
[INFO] Building PhenoTips - Patient Network - Matching Notification - Migrations 1.1-SNAPSHOT [13/14]
[INFO] --------------------------------[ jar ]---------------------------------
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[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ matching-notification-migrations ---
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[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ matching-notification-migrations ---
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[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ matching-notification-migrations ---
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[INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (jacoco-prepare) @ matching-notification-migrations ---
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[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ matching-notification-migrations ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-migrations/target/classes>
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[INFO] --- maven-resources-plugin:3.0.2:testResources (default-testResources) @ matching-notification-migrations ---
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[JENKINS] Recording test results
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[INFO] --- maven-jar-plugin:3.0.2:jar (default-jar) @ matching-notification-migrations ---
[INFO] Building jar: <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-migrations/target/matching-notification-migrations-1.1-SNAPSHOT.jar>
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[INFO] --- maven-javadoc-plugin:2.10.4:jar (default-cli) @ matching-notification-migrations ---
[INFO] 
[INFO] --------------< org.phenotips:matching-notification-rest >--------------
[INFO] Building PhenoTips - Patient Network - Matching Notification - REST 1.1-SNAPSHOT [14/14]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.0.0:clean (default-clean) @ matching-notification-rest ---
[INFO] Deleting <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/target>
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[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ matching-notification-rest ---
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[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ matching-notification-rest ---
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[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ matching-notification-rest ---
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[INFO] --- jacoco-maven-plugin:0.7.9:prepare-agent (jacoco-prepare) @ matching-notification-rest ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/patient-network-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.7.9/org.jacoco.agent-0.7.9-runtime.jar=destfile=/var/lib/jenkins/workspace/patient-network-PR/matching-notification-rest/target/jacoco.exec>
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[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ matching-notification-rest ---
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[INFO] --- maven-resources-plugin:3.0.2:resources (default-resources) @ matching-notification-rest ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.6.1:compile (default-compile) @ matching-notification-rest ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 2 source files to <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/target/classes>
[INFO] -------------------------------------------------------------
[WARNING] COMPILATION WARNING : 
[INFO] -------------------------------------------------------------
[WARNING] bootstrap class path not set in conjunction with -source 1.7
[INFO] 1 warning
[INFO] -------------------------------------------------------------
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/src/main/java/org/phenotips/matchingnotification/rest/internal/DefaultMatchingNotificationResource.java>:[272,17] cannot find symbol
  symbol: variable slf4Jlogger
[ERROR] <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/src/main/java/org/phenotips/matchingnotification/rest/internal/DefaultMatchingNotificationResource.java>:[276,17] cannot find symbol
  symbol: variable slf4Jlogger
[INFO] 2 errors 
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for PhenoTips - Patient network 1.1-SNAPSHOT:
[INFO] 
[INFO] PhenoTips - Patient network ........................ SUCCESS [  1.781 s]
[INFO] PhenoTips - Patient network - Extra permission roles for patient networking SUCCESS [ 12.341 s]
[INFO] PhenoTips - Patient network - Java APIs for accessing similar patients SUCCESS [  8.051 s]
[INFO] PhenoTips - Patient network - Default implementation for the phenotype similarity view. SUCCESS [ 10.211 s]
[INFO] PhenoTips - Patient network - Default implementation for the genotype similarity view. SUCCESS [ 13.342 s]
[INFO] PhenoTips - Patient network - Default implementation for the similar patients APIs SUCCESS [ 15.611 s]
[INFO] PhenoTips - Patient network - Java APIs for finding similar patients SUCCESS [  6.459 s]
[INFO] PhenoTips - Patient Network - Matching Notification - API SUCCESS [  8.607 s]
[INFO] PhenoTips - Patient network - Java REST APIs for finding similar patients SUCCESS [  8.741 s]
[INFO] PhenoTips - Patient network - Documents providing patient network functionality SUCCESS [  4.912 s]
[INFO] Phenotips - Patient Network - Matching Notification - JS and CSS Resources SUCCESS [  0.656 s]
[INFO] PhenoTips - Patient Network - Matching Notification - UI SUCCESS [  6.997 s]
[INFO] PhenoTips - Patient Network - Matching Notification - Migrations SUCCESS [  4.511 s]
[INFO] PhenoTips - Patient Network - Matching Notification - REST FAILURE [  4.654 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:55 min
[INFO] Finished at: 2018-11-19T22:58:55-05:00
[INFO] ------------------------------------------------------------------------
[WARNING] The requested profile "functional-tests" could not be activated because it does not exist.
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:3.6.1:compile (default-compile) on project matching-notification-rest: Compilation failure: Compilation failure:
[ERROR] <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/src/main/java/org/phenotips/matchingnotification/rest/internal/DefaultMatchingNotificationResource.java>:[272,17] cannot find symbol
[ERROR] symbol: variable slf4Jlogger
[ERROR] <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/src/main/java/org/phenotips/matchingnotification/rest/internal/DefaultMatchingNotificationResource.java>:[276,17] cannot find symbol
[ERROR] symbol: variable slf4Jlogger
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :matching-notification-rest
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-ui/pom.xml> to org.phenotips/matching-notification-ui/1.1-SNAPSHOT/matching-notification-ui-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-ui/target/matching-notification-ui.xar> to org.phenotips/matching-notification-ui/1.1-SNAPSHOT/matching-notification-ui-1.1-SNAPSHOT.xar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/pom.xml> to org.phenotips/patient-network/1.1-SNAPSHOT/patient-network-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-impl/pom.xml> to org.phenotips/patient-similarity-data-impl/1.1-SNAPSHOT/patient-similarity-data-impl-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-impl/target/patient-similarity-data-impl-1.1-SNAPSHOT.jar> to org.phenotips/patient-similarity-data-impl/1.1-SNAPSHOT/patient-similarity-data-impl-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-impl/target/patient-similarity-data-impl-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/patient-similarity-data-impl/1.1-SNAPSHOT/patient-similarity-data-impl-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-search/pom.xml> to org.phenotips/patient-similarity-search/1.1-SNAPSHOT/patient-similarity-search-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-search/target/patient-similarity-search-1.1-SNAPSHOT.jar> to org.phenotips/patient-similarity-search/1.1-SNAPSHOT/patient-similarity-search-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-search/target/patient-similarity-search-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/patient-similarity-search/1.1-SNAPSHOT/patient-similarity-search-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-resources/pom.xml> to org.phenotips/matching-notification-resources/1.1-SNAPSHOT/matching-notification-resources-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-resources/target/matching-notification-resources-1.1-SNAPSHOT.jar> to org.phenotips/matching-notification-resources/1.1-SNAPSHOT/matching-notification-resources-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-api/pom.xml> to org.phenotips/matching-notification-api/1.1-SNAPSHOT/matching-notification-api-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-api/target/matching-notification-api-1.1-SNAPSHOT.jar> to org.phenotips/matching-notification-api/1.1-SNAPSHOT/matching-notification-api-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-api/target/matching-notification-api-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/matching-notification-api/1.1-SNAPSHOT/matching-notification-api-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/access-rules/pom.xml> to org.phenotips/patient-network-access-rules/1.1-SNAPSHOT/patient-network-access-rules-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/access-rules/target/patient-network-access-rules-1.1-SNAPSHOT.jar> to org.phenotips/patient-network-access-rules/1.1-SNAPSHOT/patient-network-access-rules-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-api/pom.xml> to org.phenotips/patient-similarity-data-api/1.1-SNAPSHOT/patient-similarity-data-api-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-api/target/patient-similarity-data-api-1.1-SNAPSHOT.jar> to org.phenotips/patient-similarity-data-api/1.1-SNAPSHOT/patient-similarity-data-api-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-api/target/patient-similarity-data-api-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/patient-similarity-data-api/1.1-SNAPSHOT/patient-similarity-data-api-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-phenotype-view/pom.xml> to org.phenotips/similarity-phenotype-view/1.1-SNAPSHOT/similarity-phenotype-view-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-phenotype-view/target/similarity-phenotype-view-1.1-SNAPSHOT.jar> to org.phenotips/similarity-phenotype-view/1.1-SNAPSHOT/similarity-phenotype-view-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-phenotype-view/target/similarity-phenotype-view-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/similarity-phenotype-view/1.1-SNAPSHOT/similarity-phenotype-view-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-genotype-view/pom.xml> to org.phenotips/similarity-genotype-view/1.1-SNAPSHOT/similarity-genotype-view-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-genotype-view/target/similarity-genotype-view-1.1-SNAPSHOT.jar> to org.phenotips/similarity-genotype-view/1.1-SNAPSHOT/similarity-genotype-view-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-genotype-view/target/similarity-genotype-view-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/similarity-genotype-view/1.1-SNAPSHOT/similarity-genotype-view-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/ui/pom.xml> to org.phenotips/patient-network-ui/1.1-SNAPSHOT/patient-network-ui-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/ui/target/patient-network-ui.xar> to org.phenotips/patient-network-ui/1.1-SNAPSHOT/patient-network-ui-1.1-SNAPSHOT.xar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-migrations/pom.xml> to org.phenotips/matching-notification-migrations/1.1-SNAPSHOT/matching-notification-migrations-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-migrations/target/matching-notification-migrations-1.1-SNAPSHOT.jar> to org.phenotips/matching-notification-migrations/1.1-SNAPSHOT/matching-notification-migrations-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-rest/pom.xml> to org.phenotips/patient-similarity-data-rest/1.1-SNAPSHOT/patient-similarity-data-rest-1.1-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-rest/target/patient-similarity-data-rest-1.1-SNAPSHOT.jar> to org.phenotips/patient-similarity-data-rest/1.1-SNAPSHOT/patient-similarity-data-rest-1.1-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/similarity-data-rest/target/patient-similarity-data-rest-1.1-SNAPSHOT-javadoc.jar> to org.phenotips/patient-similarity-data-rest/1.1-SNAPSHOT/patient-similarity-data-rest-1.1-SNAPSHOT-javadoc.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/patient-network-PR/ws/matching-notification-rest/pom.xml> to org.phenotips/matching-notification-rest/1.1-SNAPSHOT/matching-notification-rest-1.1-SNAPSHOT.pom
channel stopped
[Set GitHub commit status (universal)] ERROR on repos [] (sha:3854c16) with context:patient-network-PR
Setting status of 95682e6b32f741e916ab5917f62daf79856ccb35 to FAILURE with url https://ci.phenotips.org/job/patient-network-PR/83/ and message: 'Build finished. '
Using context: jenkins


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