Build failed in Jenkins: remote-matching-PR #6

PhenoTips Jenkins ci at phenotype.ccm.sickkids.ca
Mon Oct 15 17:17:36 EDT 2018


See <https://ci.phenotips.org/job/remote-matching-PR/6/display/redirect?page=changes>

Changes:

[Sergiu Dumitriu] RM-59: Allow for back-end pagination of remote matches Updated REST path

------------------------------------------
GitHub pull request #78 of commit 3315b0738dd4cd50210a95fc9bd4bc0094ca9fe0, no merge conflicts.
Setting status of 3315b0738dd4cd50210a95fc9bd4bc0094ca9fe0 to PENDING with url https://ci.phenotips.org/job/remote-matching-PR/6/ and message: 'Build started for merge commit.'
Using context: jenkins
Building in workspace <https://ci.phenotips.org/job/remote-matching-PR/ws/>
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/phenotips/remote-matching.git # timeout=10
Fetching upstream changes from https://github.com/phenotips/remote-matching.git
 > git --version # timeout=10
using GIT_SSH to set credentials 
Setting http proxy: 20.20.20.10:488
 > git fetch --no-tags --progress https://github.com/phenotips/remote-matching.git +refs/pull/78/*:refs/remotes/origin/pr/78/*
 > git rev-parse refs/remotes/origin/pr/78/merge^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/pr/78/merge^{commit} # timeout=10
Checking out Revision 9b7169a983cc9094b6ae8b86782e7752eefc5c37 (refs/remotes/origin/pr/78/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 9b7169a983cc9094b6ae8b86782e7752eefc5c37
Commit message: "Merge 3315b0738dd4cd50210a95fc9bd4bc0094ca9fe0 into dc38bad83ef18415ff515e8686b2bb18f6fa6fae"
 > git rev-list --no-walk 5ad8ee64d3fbfe199e39db493b9f684de53fedf9 # timeout=10
No emails were triggered.
[Set GitHub commit status (universal)] PENDING on repos [] (sha:5ad8ee6) with context:remote-matching-PR
Parsing POMs
Established TCP socket on 40675
[remote-matching-PR] $ java -cp /var/lib/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-agent-1.12-alpha-1.jar:/usr/share/maven/boot/plexus-classworlds.jar org.jvnet.hudson.maven3.agent.Maven3Main /usr/share/maven /var/cache/jenkins/war/WEB-INF/lib/remoting-3.27.jar /var/lib/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-1.12-alpha-1.jar /var/lib/jenkins/plugins/maven-plugin/WEB-INF/lib/maven3-interceptor-commons-1.12-alpha-1.jar 40675
<===[JENKINS REMOTING CAPACITY]===>   channel started
Executing Maven:  -B -f <https://ci.phenotips.org/job/remote-matching-PR/ws/pom.xml> -Dmaven.repo.local=<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository> clean package javadoc:jar -Pfunctional-tests
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] Remote Matching - Parent POM
[INFO] Remote Matching - Core
[INFO] Remote Matching - Core - API
[INFO] Remote Matching - Core - Hibernate
[INFO] Remote Matching - Core - Common
[INFO] Remote Matching - Core - Server
[INFO] Remote Matching - Core - Client
[INFO] Remote Matching - Core - REST
[INFO] Remote Matching - Core - MME metrics
[INFO] Remote Matching - UI
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Remote Matching - Parent POM 1.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ remote-matching-parent ---
[INFO] Deleting <https://ci.phenotips.org/job/remote-matching-PR/ws/target>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-parent ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-parent ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/target/jacoco.exec>
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-parent ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-parent ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/target/jacoco.exec>
[WARNING] Failed to getClass for org.apache.maven.plugins.javadoc.JavadocReport
[INFO] 
[INFO] --- maven-javadoc-plugin:3.0.1:javadoc (generate-javadocs) @ remote-matching-parent ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.0.1:jar (default-cli) @ remote-matching-parent ---
[INFO] Not executing Javadoc as the project is not a Java classpath-capable package
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.MavenArtifactArchiver$2; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[WARNING] Attempt to (de-)serialize anonymous class hudson.maven.reporters.MavenFingerprinter$1; see: https://jenkins.io/redirect/serialization-of-anonymous-classes/
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Remote Matching - Core 1.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ remote-matching-core ---
[INFO] Deleting <https://ci.phenotips.org/job/remote-matching-PR/ws/core/target>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-core ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-core ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/core/target/jacoco.exec>
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-core ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-core ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/core/target/jacoco.exec>
[WARNING] Failed to getClass for org.apache.maven.plugins.javadoc.JavadocReport
[INFO] 
[INFO] --- maven-javadoc-plugin:3.0.1:javadoc (generate-javadocs) @ remote-matching-core ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.0.1:jar (default-cli) @ remote-matching-core ---
[INFO] Not executing Javadoc as the project is not a Java classpath-capable package
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Remote Matching - Core - API 1.2-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ remote-matching-core-api ---
[INFO] Deleting <https://ci.phenotips.org/job/remote-matching-PR/ws/core/api/target>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-core-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-core-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-core-api ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-core-api ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/core/api/target/jacoco.exec>
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ remote-matching-core-api ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ remote-matching-core-api ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://ci.phenotips.org/job/remote-matching-PR/ws/core/api/src/main/resources>
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ remote-matching-core-api ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 11 source files to <https://ci.phenotips.org/job/remote-matching-PR/ws/core/api/target/classes>
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ remote-matching-core-api ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://ci.phenotips.org/job/remote-matching-PR/ws/core/api/src/test/resources>
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ remote-matching-core-api ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.22.0:test (default-test) @ remote-matching-core-api ---
[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-plugins) @ remote-matching-core-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-commons-lang3) @ remote-matching-core-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.4.1:enforce (enforce-no-legacy-dependencies) @ remote-matching-core-api ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.8.1:prepare-agent (jacoco-prepare) @ remote-matching-core-api ---
[INFO] argLine set to -javaagent:<https://ci.phenotips.org/job/remote-matching-PR/ws/.repository/org/jacoco/org.jacoco.agent/0.8.1/org.jacoco.agent-0.8.1-runtime.jar=destfile=/var/lib/jenkins/workspace/remote-matching-PR/core/api/target/jacoco.exec>
[WARNING] Failed to getClass for org.apache.maven.plugins.javadoc.JavadocReport
[INFO] 
[INFO] --- maven-javadoc-plugin:3.0.1:javadoc (generate-javadocs) @ remote-matching-core-api ---
Downloading: https://repo.maven.apache.org/maven2/org/phenotips/phenotips-taglets/1.8/phenotips-taglets-1.8.pom
[JENKINS] Archiving  javadoc
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Remote Matching - Parent POM ...................... SUCCESS [1.827s]
[INFO] Remote Matching - Core ............................ SUCCESS [0.580s]
[INFO] Remote Matching - Core - API ...................... FAILURE [13.734s]
[INFO] Remote Matching - Core - Hibernate ................ SKIPPED
[INFO] Remote Matching - Core - Common ................... SKIPPED
[INFO] Remote Matching - Core - Server ................... SKIPPED
[INFO] Remote Matching - Core - Client ................... SKIPPED
[INFO] Remote Matching - Core - REST ..................... SKIPPED
[INFO] Remote Matching - Core - MME metrics .............. SKIPPED
[INFO] Remote Matching - UI .............................. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17.327s
[INFO] Finished at: Mon Oct 15 17:17:33 EDT 2018
[INFO] Final Memory: 68M/457M
[INFO] ------------------------------------------------------------------------
[WARNING] The requested profile "functional-tests" could not be activated because it does not exist.
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-javadoc-plugin:3.0.1:javadoc (generate-javadocs) on project remote-matching-core-api: An error has occurred in Javadoc report generation: Unable to resolve artifact:groupId = 'org.phenotips'
[ERROR] artifactId = 'phenotips-taglets'
[ERROR] version = '1.8': Failed to read artifact descriptor for org.phenotips:phenotips-taglets:jar:1.8: Could not transfer artifact org.phenotips:phenotips-taglets:pom:1.8 from/to central (https://repo.maven.apache.org/maven2): repo.maven.apache.org: Name or service not known: Unknown host repo.maven.apache.org: Name or service not known
[ERROR] -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :remote-matching-core-api
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/pom.xml> to org.phenotips/remote-matching-core/1.2-SNAPSHOT/remote-matching-core-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/hibernate/pom.xml> to org.phenotips/remote-matching-core-hibernate/1.2-SNAPSHOT/remote-matching-core-hibernate-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/server/pom.xml> to org.phenotips/remote-matching-core-server/1.2-SNAPSHOT/remote-matching-core-server-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/api/pom.xml> to org.phenotips/remote-matching-core-api/1.2-SNAPSHOT/remote-matching-core-api-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/client/pom.xml> to org.phenotips/remote-matching-core-client/1.2-SNAPSHOT/remote-matching-core-client-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/ui/pom.xml> to org.phenotips/remote-matching-ui/1.2-SNAPSHOT/remote-matching-ui-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/rest/pom.xml> to org.phenotips/remote-matching-core-rest/1.2-SNAPSHOT/remote-matching-core-rest-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/common/pom.xml> to org.phenotips/remote-matching-core-common/1.2-SNAPSHOT/remote-matching-core-common-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/core/metrics/pom.xml> to org.phenotips/remote-matching-core-metrics/1.2-SNAPSHOT/remote-matching-core-metrics-1.2-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/remote-matching-PR/ws/pom.xml> to org.phenotips/remote-matching-parent/1.2-SNAPSHOT/remote-matching-parent-1.2-SNAPSHOT.pom
channel stopped
[Set GitHub commit status (universal)] ERROR on repos [] (sha:5ad8ee6) with context:remote-matching-PR
Setting status of 3315b0738dd4cd50210a95fc9bd4bc0094ca9fe0 to FAILURE with url https://ci.phenotips.org/job/remote-matching-PR/6/ and message: 'Build finished. '
Using context: jenkins


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