[phenotips/phenotips.org] cc7cbe: [cleanup] Removed unneeded patched java classes

GitHub noreply at github.com
Wed Jul 18 21:01:16 EDT 2018


  Branch: refs/heads/master
  Home:   https://github.com/phenotips/phenotips.org
  Commit: cc7cbe65f977abaac428b16b19d040301a5969bc
      https://github.com/phenotips/phenotips.org/commit/cc7cbe65f977abaac428b16b19d040301a5969bc
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    R distribution/war/src/main/java/com/xpn/xwiki/plugin/skinx/AbstractSkinExtensionPlugin.java
    R distribution/war/src/main/java/com/xpn/xwiki/user/impl/xwiki/MyPersistentLoginManager.java
    R distribution/war/src/main/java/com/xpn/xwiki/web/XWikiContextInitializationFilter.java
    R distribution/war/src/main/java/com/xpn/xwiki/web/XWikiServletResponse.java
    R distribution/war/src/main/java/org/xwiki/extension/repository/aether/internal/AetherExtensionRepositoryFactory.java

  Log Message:
  -----------
  [cleanup] Removed unneeded patched java classes


  Commit: 88b6250092c100e6fce00bafe1d31456bffaec09
      https://github.com/phenotips/phenotips.org/commit/88b6250092c100e6fce00bafe1d31456bffaec09
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    R distribution/war/src/main/webapp/resources/css/xwiki-min.css
    R distribution/war/src/main/webapp/resources/js/xwiki/editors/autosave.js
    R distribution/war/src/main/webapp/resources/js/xwiki/table/livetable.js
    R distribution/war/src/main/webapp/resources/js/xwiki/widgets/modalPopup.js
    R distribution/war/src/main/webapp/resources/js/xwiki/xwiki-min.js
    R distribution/war/src/main/webapp/resources/uicomponents/suggest/suggestPicker.js
    R distribution/war/src/main/webapp/resources/uicomponents/widgets/confirmationBox.css
    R distribution/war/src/main/webapp/resources/uicomponents/widgets/confirmationBox.js
    R distribution/war/src/main/webapp/resources/uicomponents/widgets/validation/scrollValidation.js

  Log Message:
  -----------
  [cleanup] Removed unneeded resources


  Commit: 24eb0ac69b07d8aab032ebcc42a5a58a92e8fba0
      https://github.com/phenotips/phenotips.org/commit/24eb0ac69b07d8aab032ebcc42a5a58a92e8fba0
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    M distribution/hsqldb-database/pom.xml
    M distribution/hsqldb-database/src/assemble/data.xml
    M distribution/pom.xml
    M distribution/standalone/pom.xml
    M distribution/standalone/src/assemble/application.xml
    M distribution/war/pom.xml
    M distribution/war/src/main/webapp/WEB-INF/web.xml
    M pom.xml
    M resources/jetty/packaging/pom.xml
    M resources/jetty/packaging/src/main/assembly/common.xml
    M resources/jetty/packaging/src/main/assembly/distribution-mac.xml
    M resources/jetty/packaging/src/main/assembly/distribution.xml
    M resources/jetty/packaging/src/main/resources-mac/jetty/etc/jetty-91-open-browser.xml
    M resources/jetty/packaging/src/main/resources/jetty/contexts/phenotips.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty-00-logging.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty-01-deploy.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty-02-contexts.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty-50-requestlog.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty-90-notify-ready.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/jetty.xml
    M resources/jetty/packaging/src/main/resources/jetty/etc/webdefault.xml
    M resources/jetty/packaging/src/main/resources/start.bat
    M resources/jetty/packaging/src/main/resources/start.sh
    M resources/jetty/packaging/src/main/resources/stop.sh
    M resources/jetty/pom.xml
    M resources/jetty/startup-listener/pom.xml
    M resources/jetty/startup-listener/src/main/java/org/phenotips/tools/jetty/listener/NotifyListener.java
    M resources/pom.xml
    M resources/ui/pom.xml
    M resources/ui/src/main/resources/AdminGuide/Backups.xml
    M resources/ui/src/main/resources/AdminGuide/DataConfiguration.xml
    M resources/ui/src/main/resources/AdminGuide/HomepageCustomization.xml
    M resources/ui/src/main/resources/AdminGuide/Installation on Tomcat and MySQL.xml
    M resources/ui/src/main/resources/AdminGuide/Installation.xml
    M resources/ui/src/main/resources/AdminGuide/Integration.xml
    M resources/ui/src/main/resources/AdminGuide/Upgrade.xml
    M resources/ui/src/main/resources/AdminGuide/UserAdministration.xml
    M resources/ui/src/main/resources/AdminGuide/WebHome.xml
    M resources/ui/src/main/resources/AdminGuide/WebPreferences.xml
    M resources/ui/src/main/resources/Blog/Announcements.xml
    M resources/ui/src/main/resources/Blog/BlogMacro.xml
    M resources/ui/src/main/resources/Blog/Development job opening in the PhenoTips team.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 (stable) released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 1 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 10 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 11 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12r1 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12r2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 13 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 3 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 4 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 5 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 6 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 7 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 8 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 9 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Release Candidate 2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips article accepted for publication in Human Mutation.xml
    M resources/ui/src/main/resources/Blog/PhenoTips poster presented at ASHG 2013.xml
    M resources/ui/src/main/resources/Blog/PhenoTips will be part of Google Summer of Code 2013.xml
    M resources/ui/src/main/resources/Blog/PhenomeCentral playground available.xml
    M resources/ui/src/main/resources/Blog/RecentPostsPanel.xml
    M resources/ui/src/main/resources/Blog/Releases.xml
    M resources/ui/src/main/resources/Blog/WebHome.xml
    M resources/ui/src/main/resources/Carousel/Slider.xml
    M resources/ui/src/main/resources/ColorThemes/Blue.xml
    M resources/ui/src/main/resources/ColorThemes/Kiwi.xml
    M resources/ui/src/main/resources/ColorThemes/Main.xml
    M resources/ui/src/main/resources/ColorThemes/Maple leaf.xml
    M resources/ui/src/main/resources/ColorThemes/Neutral.xml
    M resources/ui/src/main/resources/ColorThemes/Orange.xml
    M resources/ui/src/main/resources/ColorThemes/OrgBlue.xml
    M resources/ui/src/main/resources/ColorThemes/Ruby.xml
    M resources/ui/src/main/resources/ColorThemes/Silver leaf.xml
    M resources/ui/src/main/resources/ColorThemes/contrast.xml
    M resources/ui/src/main/resources/Contact/IRC.xml
    M resources/ui/src/main/resources/Contact/Mailing Lists.xml
    M resources/ui/src/main/resources/Contact/Questions.xml
    M resources/ui/src/main/resources/Contact/WebHome.xml
    M resources/ui/src/main/resources/DevGuide/API.xml
    M resources/ui/src/main/resources/DevGuide/Architecture.xml
    M resources/ui/src/main/resources/DevGuide/Building.xml
    M resources/ui/src/main/resources/DevGuide/Committership.xml
    M resources/ui/src/main/resources/DevGuide/Components.xml
    M resources/ui/src/main/resources/DevGuide/ContinuousBuild.xml
    M resources/ui/src/main/resources/DevGuide/Contributing.xml
    M resources/ui/src/main/resources/DevGuide/DataAccess.xml
    M resources/ui/src/main/resources/DevGuide/Governance.xml
    M resources/ui/src/main/resources/DevGuide/JSONExport.xml
    M resources/ui/src/main/resources/DevGuide/License.xml
    M resources/ui/src/main/resources/DevGuide/PhenotypeConfiguration.xml
    M resources/ui/src/main/resources/DevGuide/SourceRepository.xml
    M resources/ui/src/main/resources/DevGuide/UIX.xml
    M resources/ui/src/main/resources/DevGuide/WebHome.xml
    M resources/ui/src/main/resources/DeveloperResources/Building.xml
    M resources/ui/src/main/resources/DeveloperResources/Committership.xml
    M resources/ui/src/main/resources/DeveloperResources/ContinuousBuild.xml
    M resources/ui/src/main/resources/DeveloperResources/Contributing.xml
    M resources/ui/src/main/resources/DeveloperResources/Governance.xml
    M resources/ui/src/main/resources/DeveloperResources/License.xml
    M resources/ui/src/main/resources/DeveloperResources/SourceRepository.xml
    M resources/ui/src/main/resources/DeveloperResources/WebHome.xml
    M resources/ui/src/main/resources/Extension/LIMS 247 integration.xml
    M resources/ui/src/main/resources/ExtensionCode/ExtensionSheet.xml
    M resources/ui/src/main/resources/FAQ/Export As JSON.xml
    M resources/ui/src/main/resources/FAQ/Export DataBase as Excel.xml
    M resources/ui/src/main/resources/FAQ/Export DataBase as JSON.xml
    M resources/ui/src/main/resources/FAQ/Export Patient Record.xml
    M resources/ui/src/main/resources/FAQ/Export as XAR.xml
    M resources/ui/src/main/resources/FAQ/How can I Export Patient Records.xml
    M resources/ui/src/main/resources/FAQ/How do I access the Administration page.xml
    M resources/ui/src/main/resources/FAQ/How do I add a pedigree.xml
    M resources/ui/src/main/resources/FAQ/How do I create a Group.xml
    M resources/ui/src/main/resources/FAQ/How do I manage user access levels.xml
    M resources/ui/src/main/resources/FAQ/How do I report a bug.xml
    M resources/ui/src/main/resources/FAQ/How do I set up a standalone instance of PhenoTips.xml
    M resources/ui/src/main/resources/FAQ/How do I use the Family Study features.xml
    M resources/ui/src/main/resources/FAQ/Overriding translations.xml
    M resources/ui/src/main/resources/FAQ/What is PhenoTips.xml
    M resources/ui/src/main/resources/FAQ/supported_browsers.xml
    M resources/ui/src/main/resources/IRC/IRCBotSchedulerJob.xml
    M resources/ui/src/main/resources/IRC/IRCConfiguration.xml
    M resources/ui/src/main/resources/IRC/JIRAIdBotListener.xml
    M resources/ui/src/main/resources/IRC/JIRASearchBotListener.xml
    M resources/ui/src/main/resources/IRC/activateCCMArchiveBot.xml
    M resources/ui/src/main/resources/Macros/SCM.xml
    M resources/ui/src/main/resources/Main/WebHome.xml
    M resources/ui/src/main/resources/Panels/Search.xml
    M resources/ui/src/main/resources/PhenoTips/About.xml
    M resources/ui/src/main/resources/PhenoTips/Availability.xml
    M resources/ui/src/main/resources/PhenoTips/Backups.xml
    M resources/ui/src/main/resources/PhenoTips/ChartGenerator.xml
    M resources/ui/src/main/resources/PhenoTips/ChartService.xml
    M resources/ui/src/main/resources/PhenoTips/ChartServiceMacros.xml
    M resources/ui/src/main/resources/PhenoTips/CheckID.xml
    M resources/ui/src/main/resources/PhenoTips/ClearToken.xml
    M resources/ui/src/main/resources/PhenoTips/CollaboratorClass.xml
    M resources/ui/src/main/resources/PhenoTips/Collaborators.xml
    M resources/ui/src/main/resources/PhenoTips/Contact.xml
    M resources/ui/src/main/resources/PhenoTips/ContentTopMenu.xml
    M resources/ui/src/main/resources/PhenoTips/CreatePatientRecord.xml
    M resources/ui/src/main/resources/PhenoTips/CreatePatientRecordForm.xml
    M resources/ui/src/main/resources/PhenoTips/DBConfigurationClass.xml
    M resources/ui/src/main/resources/PhenoTips/DBConfigurationClassDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/DBWebHomeSheet.xml
    M resources/ui/src/main/resources/PhenoTips/DatabaseFilters.xml
    M resources/ui/src/main/resources/PhenoTips/Detailed physical phenotype configuration.xml
    M resources/ui/src/main/resources/PhenoTips/DiffDiagnosisService.xml
    M resources/ui/src/main/resources/PhenoTips/DocumentMeta.xml
    M resources/ui/src/main/resources/PhenoTips/Download.xml
    M resources/ui/src/main/resources/PhenoTips/EmbeddableSkin.xml
    M resources/ui/src/main/resources/PhenoTips/EthnicitySearch.xml
    M resources/ui/src/main/resources/PhenoTips/Export.xml
    M resources/ui/src/main/resources/PhenoTips/ExportPatient.xml
    M resources/ui/src/main/resources/PhenoTips/ExportPreferences.xml
    M resources/ui/src/main/resources/PhenoTips/ExternalFileClass.xml
    M resources/ui/src/main/resources/PhenoTips/ExternalImageClass.xml
    M resources/ui/src/main/resources/PhenoTips/FeaturePreview.xml
    M resources/ui/src/main/resources/PhenoTips/FontAwesomeIcons.xml
    M resources/ui/src/main/resources/PhenoTips/Footer.xml
    M resources/ui/src/main/resources/PhenoTips/FormDesigner.xml
    M resources/ui/src/main/resources/PhenoTips/GeneInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/GeneNameService.xml
    M resources/ui/src/main/resources/PhenoTips/Generic phenotype configuration.xml
    M resources/ui/src/main/resources/PhenoTips/GroupCases.xml
    M resources/ui/src/main/resources/PhenoTips/HPOBranchDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/Home.xml
    M resources/ui/src/main/resources/PhenoTips/IRC.xml
    M resources/ui/src/main/resources/PhenoTips/ImageDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/ImprovedHome.xml
    M resources/ui/src/main/resources/PhenoTips/IndexOntology.xml
    M resources/ui/src/main/resources/PhenoTips/InvestigationClass.xml
    M resources/ui/src/main/resources/PhenoTips/JSON Sample.xml
    M resources/ui/src/main/resources/PhenoTips/JSONMacros.xml
    M resources/ui/src/main/resources/PhenoTips/LiveTableResults.xml
    M resources/ui/src/main/resources/PhenoTips/MeasurementsClass.xml
    M resources/ui/src/main/resources/PhenoTips/MenuConfigurationClass.xml
    M resources/ui/src/main/resources/PhenoTips/Navigation.xml
    M resources/ui/src/main/resources/PhenoTips/NavigationMenu.xml
    M resources/ui/src/main/resources/PhenoTips/OldWebHome.xml
    M resources/ui/src/main/resources/PhenoTips/OmimDisplay.xml
    M resources/ui/src/main/resources/PhenoTips/OmimInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimPredictService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimRemotePredictService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimService.xml
    M resources/ui/src/main/resources/PhenoTips/OntologyVersionClass.xml
    M resources/ui/src/main/resources/PhenoTips/OpenPatientRecord.xml
    M resources/ui/src/main/resources/PhenoTips/OrgSkin.xml
    M resources/ui/src/main/resources/PhenoTips/OwnerClass.xml
    M resources/ui/src/main/resources/PhenoTips/PatientAccessRightsManagement.xml
    M resources/ui/src/main/resources/PhenoTips/PatientClass.xml
    M resources/ui/src/main/resources/PhenoTips/PatientPhenotypeExportService.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheetCode.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheetMacros.xml
    M resources/ui/src/main/resources/PhenoTips/PatientTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PatientToolsService.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeClass.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeEditor.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeImageService.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeCategoryClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeDisplay.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingPreview.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMetaClass.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatient.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientConfiguration.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientServer.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientService.xml
    M resources/ui/src/main/resources/PhenoTips/RelativeClass.xml
    M resources/ui/src/main/resources/PhenoTips/Skin.xml
    M resources/ui/src/main/resources/PhenoTips/SkinCustomization.xml
    M resources/ui/src/main/resources/PhenoTips/SolrService.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidget.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetService.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetTranslations.xml
    M resources/ui/src/main/resources/PhenoTips/StudyBindingClass.xml
    M resources/ui/src/main/resources/PhenoTips/StudyBindingSheet.xml
    M resources/ui/src/main/resources/PhenoTips/StudyCases.xml
    M resources/ui/src/main/resources/PhenoTips/StudyClass.xml
    M resources/ui/src/main/resources/PhenoTips/StudySheet.xml
    M resources/ui/src/main/resources/PhenoTips/StudyTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/SuggestPatientsService.xml
    M resources/ui/src/main/resources/PhenoTips/TabelarDataMacros.xml
    M resources/ui/src/main/resources/PhenoTips/TouchscreenEvents.xml
    M resources/ui/src/main/resources/PhenoTips/UIX Directory.xml
    M resources/ui/src/main/resources/PhenoTips/UIXSheet.xml
    M resources/ui/src/main/resources/PhenoTips/UIXTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-documents.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images-exported.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__apgar.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__assisted_reproduction.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__charts-exported.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__charts.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__consanguinity.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__date_of_birth.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__diagnosis_notes.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__ethnicity.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__exam_date.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__external_id.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__family.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__family_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__gender.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__genes.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__gestation.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__global_age_of_onset.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__global_mode_of_inheritance.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__health_card.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__identifier.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__indication_for_referral.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__measurements.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__medical_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__miscarriages.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__molecular-genetics.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_id.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_suggestions.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__patient_name.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree-file.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__phenotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_development.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_phenotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__proband_info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__reports_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__required-measurements.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__variants.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__diagnosis-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__family-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__files-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__genotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__measurement-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__medical-history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__molecular-genetics-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__patient-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__phenotype-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__prenatal-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__variant-info.xml
    M resources/ui/src/main/resources/PhenoTips/Upgrade.xml
    M resources/ui/src/main/resources/PhenoTips/VCF.xml
    M resources/ui/src/main/resources/PhenoTips/VariantClass.xml
    M resources/ui/src/main/resources/PhenoTips/VisibilityClass.xml
    M resources/ui/src/main/resources/PhenoTips/WebHome.xml
    M resources/ui/src/main/resources/PhenoTips/WebPreferences.xml
    M resources/ui/src/main/resources/PhenoTips/Widgets.xml
    M resources/ui/src/main/resources/PhenoTips/YesNoNAPicker.xml
    M resources/ui/src/main/resources/Release/Release10.xml
    M resources/ui/src/main/resources/Release/Release10M12.xml
    M resources/ui/src/main/resources/Release/Release10M12R1.xml
    M resources/ui/src/main/resources/Release/Release10M12R2.xml
    M resources/ui/src/main/resources/Release/Release10M13.xml
    M resources/ui/src/main/resources/Release/Release10RC1.xml
    M resources/ui/src/main/resources/Release/Release10RC2.xml
    M resources/ui/src/main/resources/Release/ReleasePATIENTNETWORK10M2.xml
    M resources/ui/src/main/resources/Release/ReleasePATIENTNETWORK10M3.xml
    M resources/ui/src/main/resources/Release/ReleasePHENOMECENTRAL10M3.xml
    M resources/ui/src/main/resources/Release/ReleasePlanHelp.xml
    M resources/ui/src/main/resources/Release/WebHome.xml
    M resources/ui/src/main/resources/ReleaseCode/ReleaseTemplate.xml
    M resources/ui/src/main/resources/Scheduler/WatchListDailyNotifier.xml
    M resources/ui/src/main/resources/Scheduler/WatchListHourlyNotifier.xml
    M resources/ui/src/main/resources/Scheduler/WatchListWeeklyNotifier.xml
    M resources/ui/src/main/resources/UserGuide/GettingStarted.xml
    M resources/ui/src/main/resources/UserGuide/WebHome.xml
    M resources/ui/src/main/resources/XWiki/AddExtensions.xml
    M resources/ui/src/main/resources/XWiki/Admin.xml
    M resources/ui/src/main/resources/XWiki/AggregatorURLClass.xml
    M resources/ui/src/main/resources/XWiki/AttachmentSelector.xml
    M resources/ui/src/main/resources/XWiki/ClassSheet.xml
    M resources/ui/src/main/resources/XWiki/ClassSheetBinding.xml
    M resources/ui/src/main/resources/XWiki/ClassTemplate.xml
    M resources/ui/src/main/resources/XWiki/ComponentClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentDependencyClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentInterfaceClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentMethodClass.xml
    M resources/ui/src/main/resources/XWiki/ConfigurationClass.xml
    M resources/ui/src/main/resources/XWiki/CoreExtensions.xml
    M resources/ui/src/main/resources/XWiki/DateTimePicker.xml
    M resources/ui/src/main/resources/XWiki/Devs.xml
    M resources/ui/src/main/resources/XWiki/DocumentSheetBinding.xml
    M resources/ui/src/main/resources/XWiki/EditModeClass.xml
    M resources/ui/src/main/resources/XWiki/ExtensionUpdater.xml
    M resources/ui/src/main/resources/XWiki/FeedEntryClass.xml
    M resources/ui/src/main/resources/XWiki/GadgetClass.xml
    M resources/ui/src/main/resources/XWiki/GoogleAnalyticsConfig.xml
    M resources/ui/src/main/resources/XWiki/InstalledExtensions.xml
    M resources/ui/src/main/resources/XWiki/JavaScriptExtension.xml
    M resources/ui/src/main/resources/XWiki/LiveTableResults.xml
    M resources/ui/src/main/resources/XWiki/LiveTableResultsMacros.xml
    M resources/ui/src/main/resources/XWiki/Mail.xml
    M resources/ui/src/main/resources/XWiki/ObjectSheet.xml
    M resources/ui/src/main/resources/XWiki/PDFClass.xml
    M resources/ui/src/main/resources/XWiki/PDFViewerMacro.xml
    M resources/ui/src/main/resources/XWiki/RequiredRightClass.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobClass.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobSheet.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobTemplate.xml
    M resources/ui/src/main/resources/XWiki/SearchConfig.xml
    M resources/ui/src/main/resources/XWiki/SharePage.xml
    M resources/ui/src/main/resources/XWiki/SheetClass.xml
    M resources/ui/src/main/resources/XWiki/SheetDescriptorClass.xml
    M resources/ui/src/main/resources/XWiki/StyleSheetExtension.xml
    M resources/ui/src/main/resources/XWiki/TranslationDocumentClass.xml
    M resources/ui/src/main/resources/XWiki/UIExtensionClass.xml
    M resources/ui/src/main/resources/XWiki/UIExtensionSheet.xml
    M resources/ui/src/main/resources/XWiki/WatchListClass.xml
    M resources/ui/src/main/resources/XWiki/WatchListJobClass.xml
    M resources/ui/src/main/resources/XWiki/WatchListMessage.xml
    M resources/ui/src/main/resources/XWiki/WatchListRss.xml
    M resources/ui/src/main/resources/XWiki/WebHome.xml
    M resources/ui/src/main/resources/XWiki/WebPreferences.xml
    M resources/ui/src/main/resources/XWiki/WikiMacroClass.xml
    M resources/ui/src/main/resources/XWiki/WikiMacroParameterClass.xml
    M resources/ui/src/main/resources/XWiki/WikiMacros.xml
    M resources/ui/src/main/resources/XWiki/XWikiAdminGroup.xml
    M resources/ui/src/main/resources/XWiki/XWikiLogin.xml
    M resources/ui/src/main/resources/XWiki/XWikiPreferences.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerClass.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerClassTemplate.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerXwiki.xml
    M resources/ui/src/main/resources/inprogress/DictationCaptureTest.xml
    M resources/ui/src/main/resources/inprogress/WebHome.xml
    M resources/ui/src/main/resources/inprogress/WebPreferences.xml
    M resources/ui/src/main/resources/tools/DisplayTerm.xml
    M resources/ui/src/main/resources/tools/PhenotypesSearch.xml
    M resources/ui/src/main/resources/tools/WebHome.xml
    M resources/ui/src/main/resources/tools/WebPreferences.xml

  Log Message:
  -----------
  [misc] Updated license headers to AGPL3


  Commit: e79aa7b8ab1da2ae4628d7ff01eae5eeb64d0923
      https://github.com/phenotips/phenotips.org/commit/e79aa7b8ab1da2ae4628d7ff01eae5eeb64d0923
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    M pom.xml
    M resources/jetty/packaging/pom.xml
    M resources/jetty/packaging/src/main/assembly/common.xml
    R resources/jetty/packaging/src/main/assembly/distribution-mac.xml
    R resources/jetty/packaging/src/main/resources-mac/jetty/etc/jetty-91-open-browser.xml
    R resources/jetty/packaging/src/main/resources-mac/jetty/resources/jetty-logging.properties
    R resources/jetty/packaging/src/main/resources/jetty/etc/jetty-90-notify-ready.xml
    M resources/jetty/packaging/src/main/resources/jetty/resources/jetty-logging.properties
    M resources/jetty/pom.xml
    R resources/jetty/startup-listener/pom.xml
    R resources/jetty/startup-listener/src/main/java/org/phenotips/tools/jetty/listener/NotifyListener.java
    R resources/jetty/startup-listener/src/main/resources/org/phenotips/tools/jetty/listener/NotifyListener.properties

  Log Message:
  -----------
  [misc] Simplify packaging since we don't need mac-specific functionality


  Commit: f9974065c7fbc1b57f0ad735f0a9d4f1f74b8992
      https://github.com/phenotips/phenotips.org/commit/f9974065c7fbc1b57f0ad735f0a9d4f1f74b8992
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    M resources/ui/src/main/resources/AdminGuide/Backups.xml
    M resources/ui/src/main/resources/AdminGuide/DataConfiguration.xml
    M resources/ui/src/main/resources/AdminGuide/HomepageCustomization.xml
    M resources/ui/src/main/resources/AdminGuide/Installation on Tomcat and MySQL.xml
    M resources/ui/src/main/resources/AdminGuide/Installation.xml
    M resources/ui/src/main/resources/AdminGuide/Integration.xml
    M resources/ui/src/main/resources/AdminGuide/Upgrade.xml
    M resources/ui/src/main/resources/AdminGuide/UserAdministration.xml
    M resources/ui/src/main/resources/AdminGuide/WebHome.xml
    M resources/ui/src/main/resources/AdminGuide/WebPreferences.xml
    M resources/ui/src/main/resources/Blog/Announcements.xml
    M resources/ui/src/main/resources/Blog/BlogMacro.xml
    M resources/ui/src/main/resources/Blog/Development job opening in the PhenoTips team.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 (stable) released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 1 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 10 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 11 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12r1 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 12r2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 13 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 3 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 4 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 5 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 6 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 7 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 8 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Milestone 9 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips 10 Release Candidate 2 released.xml
    M resources/ui/src/main/resources/Blog/PhenoTips article accepted for publication in Human Mutation.xml
    M resources/ui/src/main/resources/Blog/PhenoTips poster presented at ASHG 2013.xml
    M resources/ui/src/main/resources/Blog/PhenoTips will be part of Google Summer of Code 2013.xml
    M resources/ui/src/main/resources/Blog/PhenomeCentral playground available.xml
    M resources/ui/src/main/resources/Blog/RecentPostsPanel.xml
    M resources/ui/src/main/resources/Blog/Releases.xml
    M resources/ui/src/main/resources/Blog/WebHome.xml
    M resources/ui/src/main/resources/Carousel/Slider.xml
    M resources/ui/src/main/resources/ColorThemes/Blue.xml
    M resources/ui/src/main/resources/ColorThemes/Kiwi.xml
    M resources/ui/src/main/resources/ColorThemes/Main.xml
    M resources/ui/src/main/resources/ColorThemes/Maple leaf.xml
    M resources/ui/src/main/resources/ColorThemes/Neutral.xml
    M resources/ui/src/main/resources/ColorThemes/Orange.xml
    M resources/ui/src/main/resources/ColorThemes/OrgBlue.xml
    M resources/ui/src/main/resources/ColorThemes/Ruby.xml
    M resources/ui/src/main/resources/ColorThemes/Silver leaf.xml
    M resources/ui/src/main/resources/ColorThemes/contrast.xml
    M resources/ui/src/main/resources/Contact/IRC.xml
    M resources/ui/src/main/resources/Contact/Mailing Lists.xml
    M resources/ui/src/main/resources/Contact/Questions.xml
    M resources/ui/src/main/resources/Contact/WebHome.xml
    M resources/ui/src/main/resources/DevGuide/API.xml
    M resources/ui/src/main/resources/DevGuide/Architecture.xml
    M resources/ui/src/main/resources/DevGuide/Building.xml
    M resources/ui/src/main/resources/DevGuide/Committership.xml
    M resources/ui/src/main/resources/DevGuide/Components.xml
    M resources/ui/src/main/resources/DevGuide/ContinuousBuild.xml
    M resources/ui/src/main/resources/DevGuide/Contributing.xml
    M resources/ui/src/main/resources/DevGuide/DataAccess.xml
    M resources/ui/src/main/resources/DevGuide/Governance.xml
    M resources/ui/src/main/resources/DevGuide/JSONExport.xml
    M resources/ui/src/main/resources/DevGuide/License.xml
    M resources/ui/src/main/resources/DevGuide/PhenotypeConfiguration.xml
    M resources/ui/src/main/resources/DevGuide/SourceRepository.xml
    M resources/ui/src/main/resources/DevGuide/UIX.xml
    M resources/ui/src/main/resources/DevGuide/WebHome.xml
    M resources/ui/src/main/resources/DeveloperResources/Building.xml
    M resources/ui/src/main/resources/DeveloperResources/Committership.xml
    M resources/ui/src/main/resources/DeveloperResources/ContinuousBuild.xml
    M resources/ui/src/main/resources/DeveloperResources/Contributing.xml
    M resources/ui/src/main/resources/DeveloperResources/Governance.xml
    M resources/ui/src/main/resources/DeveloperResources/License.xml
    M resources/ui/src/main/resources/DeveloperResources/SourceRepository.xml
    M resources/ui/src/main/resources/DeveloperResources/WebHome.xml
    M resources/ui/src/main/resources/Extension/LIMS 247 integration.xml
    M resources/ui/src/main/resources/ExtensionCode/ExtensionSheet.xml
    M resources/ui/src/main/resources/FAQ/Export As JSON.xml
    M resources/ui/src/main/resources/FAQ/Export DataBase as Excel.xml
    M resources/ui/src/main/resources/FAQ/Export DataBase as JSON.xml
    M resources/ui/src/main/resources/FAQ/Export Patient Record.xml
    M resources/ui/src/main/resources/FAQ/Export as XAR.xml
    M resources/ui/src/main/resources/FAQ/How can I Export Patient Records.xml
    M resources/ui/src/main/resources/FAQ/How do I access the Administration page.xml
    M resources/ui/src/main/resources/FAQ/How do I add a pedigree.xml
    M resources/ui/src/main/resources/FAQ/How do I create a Group.xml
    M resources/ui/src/main/resources/FAQ/How do I manage user access levels.xml
    M resources/ui/src/main/resources/FAQ/How do I report a bug.xml
    M resources/ui/src/main/resources/FAQ/How do I set up a standalone instance of PhenoTips.xml
    M resources/ui/src/main/resources/FAQ/How do I use the Family Study features.xml
    M resources/ui/src/main/resources/FAQ/Overriding translations.xml
    M resources/ui/src/main/resources/FAQ/What is PhenoTips.xml
    M resources/ui/src/main/resources/FAQ/supported_browsers.xml
    M resources/ui/src/main/resources/IRC/IRCBotSchedulerJob.xml
    M resources/ui/src/main/resources/IRC/IRCConfiguration.xml
    M resources/ui/src/main/resources/IRC/JIRAIdBotListener.xml
    M resources/ui/src/main/resources/IRC/JIRASearchBotListener.xml
    M resources/ui/src/main/resources/IRC/activateCCMArchiveBot.xml
    M resources/ui/src/main/resources/Macros/SCM.xml
    M resources/ui/src/main/resources/Main/WebHome.xml
    M resources/ui/src/main/resources/Panels/Search.xml
    M resources/ui/src/main/resources/PhenoTips/About.xml
    M resources/ui/src/main/resources/PhenoTips/Availability.xml
    M resources/ui/src/main/resources/PhenoTips/Backups.xml
    M resources/ui/src/main/resources/PhenoTips/ChartGenerator.xml
    M resources/ui/src/main/resources/PhenoTips/ChartService.xml
    M resources/ui/src/main/resources/PhenoTips/ChartServiceMacros.xml
    M resources/ui/src/main/resources/PhenoTips/CheckID.xml
    M resources/ui/src/main/resources/PhenoTips/ClearToken.xml
    M resources/ui/src/main/resources/PhenoTips/CollaboratorClass.xml
    M resources/ui/src/main/resources/PhenoTips/Collaborators.xml
    M resources/ui/src/main/resources/PhenoTips/Contact.xml
    M resources/ui/src/main/resources/PhenoTips/ContentTopMenu.xml
    M resources/ui/src/main/resources/PhenoTips/CreatePatientRecord.xml
    M resources/ui/src/main/resources/PhenoTips/CreatePatientRecordForm.xml
    M resources/ui/src/main/resources/PhenoTips/DBConfigurationClass.xml
    M resources/ui/src/main/resources/PhenoTips/DBConfigurationClassDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/DBWebHomeSheet.xml
    M resources/ui/src/main/resources/PhenoTips/DatabaseFilters.xml
    M resources/ui/src/main/resources/PhenoTips/Detailed physical phenotype configuration.xml
    M resources/ui/src/main/resources/PhenoTips/DiffDiagnosisService.xml
    M resources/ui/src/main/resources/PhenoTips/DocumentMeta.xml
    M resources/ui/src/main/resources/PhenoTips/Download.xml
    M resources/ui/src/main/resources/PhenoTips/EmbeddableSkin.xml
    M resources/ui/src/main/resources/PhenoTips/EthnicitySearch.xml
    M resources/ui/src/main/resources/PhenoTips/Export.xml
    M resources/ui/src/main/resources/PhenoTips/ExportPatient.xml
    M resources/ui/src/main/resources/PhenoTips/ExportPreferences.xml
    M resources/ui/src/main/resources/PhenoTips/ExternalFileClass.xml
    M resources/ui/src/main/resources/PhenoTips/ExternalImageClass.xml
    M resources/ui/src/main/resources/PhenoTips/FeaturePreview.xml
    M resources/ui/src/main/resources/PhenoTips/FontAwesomeIcons.xml
    M resources/ui/src/main/resources/PhenoTips/Footer.xml
    M resources/ui/src/main/resources/PhenoTips/FormDesigner.xml
    M resources/ui/src/main/resources/PhenoTips/GeneInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/GeneNameService.xml
    M resources/ui/src/main/resources/PhenoTips/Generic phenotype configuration.xml
    M resources/ui/src/main/resources/PhenoTips/GroupCases.xml
    M resources/ui/src/main/resources/PhenoTips/HPOBranchDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/Home.xml
    M resources/ui/src/main/resources/PhenoTips/IRC.xml
    M resources/ui/src/main/resources/PhenoTips/ImageDisplayer.xml
    M resources/ui/src/main/resources/PhenoTips/ImprovedHome.xml
    M resources/ui/src/main/resources/PhenoTips/IndexOntology.xml
    M resources/ui/src/main/resources/PhenoTips/InvestigationClass.xml
    M resources/ui/src/main/resources/PhenoTips/JSON Sample.xml
    M resources/ui/src/main/resources/PhenoTips/JSONMacros.xml
    M resources/ui/src/main/resources/PhenoTips/LiveTableResults.xml
    M resources/ui/src/main/resources/PhenoTips/MeasurementsClass.xml
    M resources/ui/src/main/resources/PhenoTips/MenuConfigurationClass.xml
    M resources/ui/src/main/resources/PhenoTips/Navigation.xml
    M resources/ui/src/main/resources/PhenoTips/NavigationMenu.xml
    M resources/ui/src/main/resources/PhenoTips/OldWebHome.xml
    M resources/ui/src/main/resources/PhenoTips/OmimDisplay.xml
    M resources/ui/src/main/resources/PhenoTips/OmimInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimPredictService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimRemotePredictService.xml
    M resources/ui/src/main/resources/PhenoTips/OmimService.xml
    M resources/ui/src/main/resources/PhenoTips/OntologyVersionClass.xml
    M resources/ui/src/main/resources/PhenoTips/OpenPatientRecord.xml
    M resources/ui/src/main/resources/PhenoTips/OrgSkin.xml
    M resources/ui/src/main/resources/PhenoTips/OwnerClass.xml
    M resources/ui/src/main/resources/PhenoTips/PatientAccessRightsManagement.xml
    M resources/ui/src/main/resources/PhenoTips/PatientClass.xml
    M resources/ui/src/main/resources/PhenoTips/PatientPhenotypeExportService.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheetCode.xml
    M resources/ui/src/main/resources/PhenoTips/PatientSheetMacros.xml
    M resources/ui/src/main/resources/PhenoTips/PatientTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PatientToolsService.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeClass.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeEditor.xml
    M resources/ui/src/main/resources/PhenoTips/PedigreeImageService.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeCategoryClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeDisplay.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeInfoService.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingClass.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingPreview.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingSheet.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMappingTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/PhenotypeMetaClass.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatient.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientConfiguration.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientServer.xml
    M resources/ui/src/main/resources/PhenoTips/PushPatientService.xml
    M resources/ui/src/main/resources/PhenoTips/RelativeClass.xml
    M resources/ui/src/main/resources/PhenoTips/Skin.xml
    M resources/ui/src/main/resources/PhenoTips/SkinCustomization.xml
    M resources/ui/src/main/resources/PhenoTips/SolrService.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidget.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetService.xml
    M resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetTranslations.xml
    M resources/ui/src/main/resources/PhenoTips/StudyBindingClass.xml
    M resources/ui/src/main/resources/PhenoTips/StudyBindingSheet.xml
    M resources/ui/src/main/resources/PhenoTips/StudyCases.xml
    M resources/ui/src/main/resources/PhenoTips/StudyClass.xml
    M resources/ui/src/main/resources/PhenoTips/StudySheet.xml
    M resources/ui/src/main/resources/PhenoTips/StudyTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/SuggestPatientsService.xml
    M resources/ui/src/main/resources/PhenoTips/TabelarDataMacros.xml
    M resources/ui/src/main/resources/PhenoTips/TouchscreenEvents.xml
    M resources/ui/src/main/resources/PhenoTips/UIX Directory.xml
    M resources/ui/src/main/resources/PhenoTips/UIXSheet.xml
    M resources/ui/src/main/resources/PhenoTips/UIXTemplate.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-documents.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images-exported.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__apgar.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__assisted_reproduction.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__charts-exported.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__charts.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__consanguinity.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__date_of_birth.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__diagnosis_notes.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__ethnicity.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__exam_date.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__external_id.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__family.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__family_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__gender.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__genes.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__gestation.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__global_age_of_onset.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__global_mode_of_inheritance.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__health_card.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__identifier.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__indication_for_referral.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__measurements.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__medical_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__miscarriages.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__molecular-genetics.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_id.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_suggestions.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__patient_name.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree-file.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__phenotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_development.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_phenotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__proband_info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__reports_history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__required-measurements.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Field__variants.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__diagnosis-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__family-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__files-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__genotype.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__measurement-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__medical-history.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__molecular-genetics-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__patient-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__phenotype-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__prenatal-info.xml
    M resources/ui/src/main/resources/PhenoTips/UIX_Section__variant-info.xml
    M resources/ui/src/main/resources/PhenoTips/Upgrade.xml
    M resources/ui/src/main/resources/PhenoTips/VCF.xml
    M resources/ui/src/main/resources/PhenoTips/VariantClass.xml
    M resources/ui/src/main/resources/PhenoTips/VisibilityClass.xml
    M resources/ui/src/main/resources/PhenoTips/WebHome.xml
    M resources/ui/src/main/resources/PhenoTips/WebPreferences.xml
    M resources/ui/src/main/resources/PhenoTips/Widgets.xml
    M resources/ui/src/main/resources/PhenoTips/YesNoNAPicker.xml
    M resources/ui/src/main/resources/Release/Release10.xml
    M resources/ui/src/main/resources/Release/Release10M12.xml
    M resources/ui/src/main/resources/Release/Release10M12R1.xml
    M resources/ui/src/main/resources/Release/Release10M12R2.xml
    M resources/ui/src/main/resources/Release/Release10M13.xml
    M resources/ui/src/main/resources/Release/Release10RC1.xml
    M resources/ui/src/main/resources/Release/Release10RC2.xml
    M resources/ui/src/main/resources/Release/ReleasePATIENTNETWORK10M2.xml
    M resources/ui/src/main/resources/Release/ReleasePATIENTNETWORK10M3.xml
    M resources/ui/src/main/resources/Release/ReleasePHENOMECENTRAL10M3.xml
    M resources/ui/src/main/resources/Release/ReleasePlanHelp.xml
    M resources/ui/src/main/resources/Release/WebHome.xml
    M resources/ui/src/main/resources/ReleaseCode/ReleaseTemplate.xml
    M resources/ui/src/main/resources/Scheduler/WatchListDailyNotifier.xml
    M resources/ui/src/main/resources/Scheduler/WatchListHourlyNotifier.xml
    M resources/ui/src/main/resources/Scheduler/WatchListWeeklyNotifier.xml
    M resources/ui/src/main/resources/UserGuide/GettingStarted.xml
    M resources/ui/src/main/resources/UserGuide/WebHome.xml
    M resources/ui/src/main/resources/XWiki/AddExtensions.xml
    M resources/ui/src/main/resources/XWiki/Admin.xml
    M resources/ui/src/main/resources/XWiki/AggregatorURLClass.xml
    M resources/ui/src/main/resources/XWiki/AttachmentSelector.xml
    M resources/ui/src/main/resources/XWiki/ClassSheet.xml
    M resources/ui/src/main/resources/XWiki/ClassSheetBinding.xml
    M resources/ui/src/main/resources/XWiki/ClassTemplate.xml
    M resources/ui/src/main/resources/XWiki/ComponentClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentDependencyClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentInterfaceClass.xml
    M resources/ui/src/main/resources/XWiki/ComponentMethodClass.xml
    M resources/ui/src/main/resources/XWiki/ConfigurationClass.xml
    M resources/ui/src/main/resources/XWiki/CoreExtensions.xml
    M resources/ui/src/main/resources/XWiki/DateTimePicker.xml
    M resources/ui/src/main/resources/XWiki/Devs.xml
    M resources/ui/src/main/resources/XWiki/DocumentSheetBinding.xml
    M resources/ui/src/main/resources/XWiki/EditModeClass.xml
    M resources/ui/src/main/resources/XWiki/ExtensionUpdater.xml
    M resources/ui/src/main/resources/XWiki/FeedEntryClass.xml
    M resources/ui/src/main/resources/XWiki/GadgetClass.xml
    M resources/ui/src/main/resources/XWiki/GoogleAnalyticsConfig.xml
    M resources/ui/src/main/resources/XWiki/InstalledExtensions.xml
    M resources/ui/src/main/resources/XWiki/JavaScriptExtension.xml
    M resources/ui/src/main/resources/XWiki/LiveTableResults.xml
    M resources/ui/src/main/resources/XWiki/LiveTableResultsMacros.xml
    M resources/ui/src/main/resources/XWiki/Mail.xml
    M resources/ui/src/main/resources/XWiki/ObjectSheet.xml
    M resources/ui/src/main/resources/XWiki/PDFClass.xml
    M resources/ui/src/main/resources/XWiki/PDFViewerMacro.xml
    M resources/ui/src/main/resources/XWiki/RequiredRightClass.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobClass.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobSheet.xml
    M resources/ui/src/main/resources/XWiki/SchedulerJobTemplate.xml
    M resources/ui/src/main/resources/XWiki/SearchConfig.xml
    M resources/ui/src/main/resources/XWiki/SharePage.xml
    M resources/ui/src/main/resources/XWiki/SheetClass.xml
    M resources/ui/src/main/resources/XWiki/SheetDescriptorClass.xml
    M resources/ui/src/main/resources/XWiki/StyleSheetExtension.xml
    M resources/ui/src/main/resources/XWiki/TranslationDocumentClass.xml
    M resources/ui/src/main/resources/XWiki/UIExtensionClass.xml
    M resources/ui/src/main/resources/XWiki/UIExtensionSheet.xml
    M resources/ui/src/main/resources/XWiki/WatchListClass.xml
    M resources/ui/src/main/resources/XWiki/WatchListJobClass.xml
    M resources/ui/src/main/resources/XWiki/WatchListMessage.xml
    M resources/ui/src/main/resources/XWiki/WatchListRss.xml
    M resources/ui/src/main/resources/XWiki/WebHome.xml
    M resources/ui/src/main/resources/XWiki/WebPreferences.xml
    M resources/ui/src/main/resources/XWiki/WikiMacroClass.xml
    M resources/ui/src/main/resources/XWiki/WikiMacroParameterClass.xml
    M resources/ui/src/main/resources/XWiki/WikiMacros.xml
    M resources/ui/src/main/resources/XWiki/XWikiAdminGroup.xml
    M resources/ui/src/main/resources/XWiki/XWikiLogin.xml
    M resources/ui/src/main/resources/XWiki/XWikiPreferences.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerClass.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerClassTemplate.xml
    M resources/ui/src/main/resources/XWiki/XWikiServerXwiki.xml
    M resources/ui/src/main/resources/inprogress/DictationCaptureTest.xml
    M resources/ui/src/main/resources/inprogress/WebHome.xml
    M resources/ui/src/main/resources/inprogress/WebPreferences.xml
    M resources/ui/src/main/resources/tools/DisplayTerm.xml
    M resources/ui/src/main/resources/tools/PhenotypesSearch.xml
    M resources/ui/src/main/resources/tools/WebHome.xml
    M resources/ui/src/main/resources/tools/WebPreferences.xml

  Log Message:
  -----------
  cleanup] Fixed license headers and attachment authors


  Commit: 67d574b56b9a0391e42c678d1315b5abab81e5df
      https://github.com/phenotips/phenotips.org/commit/67d574b56b9a0391e42c678d1315b5abab81e5df
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2018-07-18 (Wed, 18 Jul 2018)

  Changed paths:
    R resources/ui/src/main/resources/PhenoTips/Detailed physical phenotype configuration.xml
    R resources/ui/src/main/resources/PhenoTips/DiffDiagnosisService.xml
    R resources/ui/src/main/resources/PhenoTips/FontAwesomeIcons.xml
    R resources/ui/src/main/resources/PhenoTips/FormDesigner.xml
    R resources/ui/src/main/resources/PhenoTips/GeneInfoService.xml
    R resources/ui/src/main/resources/PhenoTips/GeneNameService.xml
    R resources/ui/src/main/resources/PhenoTips/Generic phenotype configuration.xml
    R resources/ui/src/main/resources/PhenoTips/GroupCases.xml
    R resources/ui/src/main/resources/PhenoTips/HPOBranchDisplayer.xml
    R resources/ui/src/main/resources/PhenoTips/ImageDisplayer.xml
    R resources/ui/src/main/resources/PhenoTips/IndexOntology.xml
    R resources/ui/src/main/resources/PhenoTips/JSONMacros.xml
    R resources/ui/src/main/resources/PhenoTips/OmimDisplay.xml
    R resources/ui/src/main/resources/PhenoTips/OmimInfoService.xml
    R resources/ui/src/main/resources/PhenoTips/OmimPredictService.xml
    R resources/ui/src/main/resources/PhenoTips/OmimService.xml
    R resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupClass.xml
    R resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupSheet.xml
    R resources/ui/src/main/resources/PhenoTips/PhenoTipsGroupTemplate.xml
    R resources/ui/src/main/resources/PhenoTips/PhenotypeInfoService.xml
    R resources/ui/src/main/resources/PhenoTips/PhenotypeMappingClass.xml
    R resources/ui/src/main/resources/PhenoTips/PhenotypeMappingPreview.xml
    R resources/ui/src/main/resources/PhenoTips/PhenotypeMappingSheet.xml
    R resources/ui/src/main/resources/PhenoTips/PhenotypeMappingTemplate.xml
    R resources/ui/src/main/resources/PhenoTips/SolrService.xml
    R resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidget.xml
    R resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetService.xml
    R resources/ui/src/main/resources/PhenoTips/SpecificityMetricWidgetTranslations.xml
    R resources/ui/src/main/resources/PhenoTips/StudyBindingClass.xml
    R resources/ui/src/main/resources/PhenoTips/StudyBindingSheet.xml
    R resources/ui/src/main/resources/PhenoTips/StudyCases.xml
    R resources/ui/src/main/resources/PhenoTips/StudyClass.xml
    R resources/ui/src/main/resources/PhenoTips/StudySheet.xml
    R resources/ui/src/main/resources/PhenoTips/StudyTemplate.xml
    R resources/ui/src/main/resources/PhenoTips/TabelarDataMacros.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-documents.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images-exported.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__additional-images.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__apgar.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__assisted_reproduction.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__charts-exported.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__charts.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__consanguinity.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__date_of_birth.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__diagnosis_notes.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__ethnicity.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__exam_date.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__external_id.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__family.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__family_history.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__gender.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__genes.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__gestation.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__global_age_of_onset.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__global_mode_of_inheritance.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__health_card.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__identifier.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__indication_for_referral.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__measurements.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__medical_history.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__miscarriages.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__molecular-genetics.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_id.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__omim_suggestions.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__patient_name.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree-file.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__pedigree.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__phenotype.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_development.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__prenatal_phenotype.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__proband_info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__reports_history.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__required-measurements.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Field__variants.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__diagnosis-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__family-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__files-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__genotype.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__measurement-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__medical-history.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__molecular-genetics-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__patient-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__phenotype-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__prenatal-info.xml
    R resources/ui/src/main/resources/PhenoTips/UIX_Section__variant-info.xml
    R resources/ui/src/main/resources/PhenoTips/Widgets.xml
    R resources/ui/src/main/resources/PhenoTips/YesNoNAPicker.xml
    R resources/ui/src/main/resources/XWiki/DateTimePicker.xml

  Log Message:
  -----------
  [cleanup] Removed some PhenoTips code


Compare: https://github.com/phenotips/phenotips.org/compare/af2b3bcc4a2c...67d574b56b9a
      **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/

      Functionality will be removed from GitHub.com on January 31st, 2019.


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