[phenotips/remote-matching] 811276: RM-88: PC patients with free text in diagnoses are...

GitHub noreply at github.com
Mon Jan 22 17:20:26 EST 2018


  Branch: refs/heads/stable-1.1.x
  Home:   https://github.com/phenotips/remote-matching
  Commit: 81127614559550aa75d0cb533ed387753e6faf94
      https://github.com/phenotips/remote-matching/commit/81127614559550aa75d0cb533ed387753e6faf94
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/common/src/main/java/org/phenotips/remote/common/internal/api/DefaultPatientToJSONConverter.java

  Log Message:
  -----------
  RM-88: PC patients with free text in diagnoses are not correctly sent over MME API
Fixed


  Commit: 4703a27ed00d9cc8afe3ebdf3bd0d2a5eb2253b5
      https://github.com/phenotips/remote-matching/commit/4703a27ed00d9cc8afe3ebdf3bd0d2a5eb2253b5
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java
    M core/server/src/main/java/org/phenotips/remote/server/internal/IncomingSearchRequestProcessor.java

  Log Message:
  -----------
  RM-89: Non-consented patients are considered as matches for incoming MME requests
Fixed


  Commit: e76b354d1309c8a76f74cabe34932c16c5d2704e
      https://github.com/phenotips/remote-matching/commit/e76b354d1309c8a76f74cabe34932c16c5d2704e
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/api/src/main/java/org/phenotips/remote/api/ApiConfiguration.java
    M core/api/src/main/java/org/phenotips/remote/api/IncomingMatchRequest.java
    M core/client/src/main/java/org/phenotips/remote/client/internal/DefaultRemoteMatchingService.java
    M core/common/src/main/java/org/phenotips/remote/common/internal/api/DefaultIncomingJSONParser.java
    M core/hibernate/src/main/java/org/phenotips/remote/hibernate/internal/DefaultIncomingMatchRequest.java
    M core/server/src/main/java/org/phenotips/remote/server/internal/IncomingSearchRequestProcessor.java

  Log Message:
  -----------
  RM-92: MME test patients should not be displayed as real matches in matching notification and on the patient page
Fixed


  Commit: 263633770b72e2121034f5448b9d74d0f3e640c0
      https://github.com/phenotips/remote-matching/commit/263633770b72e2121034f5448b9d74d0f3e640c0
  Author: veronikaslc <veronika.koltunov at gmail.com>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java

  Log Message:
  -----------
  RM-90: Record start and end time of a "find all MME matches" run
Done


  Commit: d48e8d86f31d69c59310cd86c0cb55b7fc991f24
      https://github.com/phenotips/remote-matching/commit/d48e8d86f31d69c59310cd86c0cb55b7fc991f24
  Author: veronikaslc <veronika.koltunov at gmail.com>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java

  Log Message:
  -----------
  RM-90: Record start and end time of a "find all MME matches" run

Addressed codereview comments


  Commit: 34376a125dd94f3826076c81962a4cf8e99eac4d
      https://github.com/phenotips/remote-matching/commit/34376a125dd94f3826076c81962a4cf8e99eac4d
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java

  Log Message:
  -----------
  RM-90: Record start and end time of a "find all MME matches" run

Added more logging and more error catching


  Commit: 643907bbe857eed0c602d2992339b627c57a66b0
      https://github.com/phenotips/remote-matching/commit/643907bbe857eed0c602d2992339b627c57a66b0
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-17 (Wed, 17 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java

  Log Message:
  -----------
  RM-90: Record start and end time of a "find all MME matches" run

Added basic statistic about number of patients matched


  Commit: 5eda6c00cc08b622d6584c587660d810a6b260c6
      https://github.com/phenotips/remote-matching/commit/5eda6c00cc08b622d6584c587660d810a6b260c6
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-21 (Sun, 21 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java

  Log Message:
  -----------
  RM-90: Record start and end time of a "find all MME matches" run

Refactored code according to latest changes in PN (RemoteMatchFinder now extends AbstractMatchFinder)


  Commit: 3ace04650f390ab63b18f46b299f3bd822648544
      https://github.com/phenotips/remote-matching/commit/3ace04650f390ab63b18f46b299f3bd822648544
  Author: Andrew Misyura <asm at phenotips.org>
  Date:   2018-01-21 (Sun, 21 Jan 2018)

  Changed paths:
    M core/client/src/main/java/org/phenotips/remote/client/internal/DefaultRemoteMatchingService.java

  Log Message:
  -----------
  [misc] Replaced unnecessary logger.error() with logger.debug()


  Commit: 5447419754c20822f19f59bbcff780ea54d50daa
      https://github.com/phenotips/remote-matching/commit/5447419754c20822f19f59bbcff780ea54d50daa
  Author: allasm <allasm at gmail.com>
  Date:   2018-01-22 (Mon, 22 Jan 2018)

  Changed paths:
    M core/api/src/main/java/org/phenotips/remote/api/ApiConfiguration.java
    M core/api/src/main/java/org/phenotips/remote/api/IncomingMatchRequest.java
    M core/client/src/main/java/org/phenotips/remote/client/internal/DefaultRemoteMatchingService.java
    M core/client/src/main/java/org/phenotips/remote/client/internal/RemoteMatchFinder.java
    M core/common/src/main/java/org/phenotips/remote/common/internal/api/DefaultIncomingJSONParser.java
    M core/common/src/main/java/org/phenotips/remote/common/internal/api/DefaultPatientToJSONConverter.java
    M core/hibernate/src/main/java/org/phenotips/remote/hibernate/internal/DefaultIncomingMatchRequest.java
    M core/server/src/main/java/org/phenotips/remote/server/internal/IncomingSearchRequestProcessor.java

  Log Message:
  -----------
  Merge pull request #69 from phenotips/stable-1.1.6

All 1.1.6 tasks/pull requests combined and tested together


Compare: https://github.com/phenotips/remote-matching/compare/245212113d46...5447419754c2


More information about the notifications mailing list