[phenotips/ontologizer] ac9398: PT-3550: Updated ontologizer-core to use slf4j

GitHub noreply at github.com
Thu Jan 18 16:22:44 EST 2018


  Branch: refs/heads/master
  Home:   https://github.com/phenotips/ontologizer
  Commit: ac9398b2430379d1c60409e9435acfeed6434de5
      https://github.com/phenotips/ontologizer/commit/ac9398b2430379d1c60409e9435acfeed6434de5
  Author: Orion Buske <orion.buske at gmail.com>
  Date:   2018-01-09 (Tue, 09 Jan 2018)

  Changed paths:
    M core/pom.xml
    M core/src/main/java/ontologizer/FileCache.java
    M core/src/main/java/ontologizer/association/AssociationParser.java
    M core/src/main/java/ontologizer/calculation/EnrichedGOTermsResult.java
    M core/src/main/java/ontologizer/calculation/SemanticCalculation.java
    M core/src/main/java/ontologizer/calculation/SemanticResult.java
    M core/src/main/java/ontologizer/calculation/b2g/Bayes2GOCalculation.java
    M core/src/main/java/ontologizer/dotwriter/GODOTWriter.java
    M core/src/main/java/ontologizer/enumeration/GOTermCounter.java
    M core/src/main/java/ontologizer/go/OBOParser.java
    M core/src/main/java/ontologizer/go/Ontology.java
    M core/src/main/java/ontologizer/set/StudySet.java
    M core/src/main/java/ontologizer/set/StudySetFactory.java
    M core/src/main/java/ontologizer/worksets/WorkSetLoadThread.java
    M core/src/main/java/sonumina/math/graph/DirectedGraphDotLayout.java

  Log Message:
  -----------
  PT-3550: Updated ontologizer-core to use slf4j

This allows xwikis logback config to filter these logs
Modules not used by phenotips were not updated and may still use java utils logging


  Commit: a9f7a0f3fb5d9c16bb8c1a044e9364cf08fee9db
      https://github.com/phenotips/ontologizer/commit/a9f7a0f3fb5d9c16bb8c1a044e9364cf08fee9db
  Author: Sergiu Dumitriu <sdumitriu at users.noreply.github.com>
  Date:   2018-01-18 (Thu, 18 Jan 2018)

  Changed paths:
    M core/pom.xml
    M core/src/main/java/ontologizer/FileCache.java
    M core/src/main/java/ontologizer/association/AssociationParser.java
    M core/src/main/java/ontologizer/calculation/EnrichedGOTermsResult.java
    M core/src/main/java/ontologizer/calculation/SemanticCalculation.java
    M core/src/main/java/ontologizer/calculation/SemanticResult.java
    M core/src/main/java/ontologizer/calculation/b2g/Bayes2GOCalculation.java
    M core/src/main/java/ontologizer/dotwriter/GODOTWriter.java
    M core/src/main/java/ontologizer/enumeration/GOTermCounter.java
    M core/src/main/java/ontologizer/go/OBOParser.java
    M core/src/main/java/ontologizer/go/Ontology.java
    M core/src/main/java/ontologizer/set/StudySet.java
    M core/src/main/java/ontologizer/set/StudySetFactory.java
    M core/src/main/java/ontologizer/worksets/WorkSetLoadThread.java
    M core/src/main/java/sonumina/math/graph/DirectedGraphDotLayout.java

  Log Message:
  -----------
  Merge pull request #3 from phenotips/slf4j

PT-3550: Updated ontologizer-core to use slf4j


Compare: https://github.com/phenotips/ontologizer/compare/46027d8e4c74...a9f7a0f3fb5d


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