Build failed in Jenkins: PhenoTips » PhenoTips - Navigation - Functional Tests #860

PhenoTips Jenkins ci at phenotype.ccm.sickkids.ca
Mon Jan 15 16:07:34 EST 2018


See <https://ci.phenotips.org/job/PhenoTips/org.phenotips$phenotips-navigation-tests/860/display/redirect?page=changes>

Changes:

[noreply] Merge pull request #2529 from phenotips/PT-3535

------------------------------------------
[...truncated 8.41 KB...]
[INFO]   .... Imported 90 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/components/default-settings/target/phenotips-default-settings.xar
[INFO]   .... Imported 5 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/components/skin/ui/target/phenotips-skin-ui.xar
[INFO]   .... Imported 19 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/components/phenotype-suggest-service/ui/target/phenotype-suggest-service-ui.xar
[INFO]   .... Imported 1 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/.repository/org/xwiki/platform/xwiki-platform-search-ui/7.1.4/xwiki-platform-search-ui-7.1.4.xar
[INFO]   .... Imported 12 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/.repository/org/xwiki/platform/xwiki-platform-attachment-ui/7.1.4/xwiki-platform-attachment-ui-7.1.4.xar
[INFO]   .... Imported 1 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/.repository/org/xwiki/platform/xwiki-platform-uiextension-ui/7.1.4/xwiki-platform-uiextension-ui-7.1.4.xar
[INFO]   .... Imported 1 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/components/vocabularies/hpo/ui/target/vocabulary-hpo-ui.xar
[INFO]   .... Imported 11 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/components/application-configuration/ui/target/application-configuration-ui.xar
[INFO]   .... Imported 3 documents
[INFO]   ... Importing XAR file: /var/lib/jenkins/workspace/PhenoTips/.repository/org/xwiki/enterprise/xwiki-enterprise-ui-admin-user/7.1.4/xwiki-enterprise-ui-admin-user-7.1.4.xar
[INFO]   .... Imported 3 documents
[INFO] 
[INFO] --- maven-surefire-plugin:2.19.1:test (default-test) @ phenotips-navigation-tests ---

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 T E S T S
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16:05:24.505 [pool-3-thread-1] INFO  o.x.test.integration.XWikiExecutor - Checking if an XWiki server is already started at [http://localhost:8080]
16:05:39.649 [pool-3-thread-1] INFO  o.x.test.integration.XWikiExecutor - No server is responding on [http://localhost:8080/bin/get/Main/] after [15] seconds
16:05:39.650 [pool-3-thread-1] INFO  o.x.test.integration.XWikiExecutor - Starting XWiki server at [http://localhost:8080]
16:05:39.688 [pool-3-thread-1] INFO  o.x.test.integration.XWikiExecutor - Checking that XWiki is up and running...
16:05:39.780 [Thread-1] INFO  o.x.t.i.XWikiLogOutputStream - Starting Jetty on port 8080, please wait...
16:05:48.738 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 2018-01-15 16:05:48,735 [main] ERROR .o.i.DefaultObservationManager - Failed to lookup listeners 
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [role = [interface org.xwiki.observation.EventListener] hint = [deprecated-phenotype-updater]]
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:216)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceList(EmbeddableComponentManager.java:198)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.observation.internal.DefaultObservationManager.initializeListeners(DefaultObservationManager.java:164)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.observation.internal.DefaultObservationManager.getListenersByEvent(DefaultObservationManager.java:131)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.observation.internal.DefaultObservationManager.notify(DefaultObservationManager.java:267)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.observation.internal.DefaultObservationManager.notify(DefaultObservationManager.java:321)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.container.servlet.XWikiServletContextListener.contextInitialized(XWikiServletContextListener.java:118)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.ContextHandler.callContextInitialized(ContextHandler.java:782)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.servlet.ServletContextHandler.callContextInitialized(ServletContextHandler.java:424)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.ContextHandler.startContext(ContextHandler.java:774)
16:05:48.739 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.servlet.ServletContextHandler.startContext(ServletContextHandler.java:249)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppContext.startContext(WebAppContext.java:1242)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.ContextHandler.doStart(ContextHandler.java:717)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:494)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.bindings.StandardStarter.processBinding(StandardStarter.java:39)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.AppLifeCycle.runBindings(AppLifeCycle.java:186)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.requestAppGoal(DeploymentManager.java:494)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.addApp(DeploymentManager.java:141)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider.fileAdded(ScanningAppProvider.java:145)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider$1.fileAdded(ScanningAppProvider.java:56)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.reportAddition(Scanner.java:615)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.reportDifferences(Scanner.java:540)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.scan(Scanner.java:403)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.doStart(Scanner.java:337)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:48.740 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider.doStart(ScanningAppProvider.java:121)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.startAppProvider(DeploymentManager.java:555)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.doStart(DeploymentManager.java:230)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AggregateLifeCycle.doStart(AggregateLifeCycle.java:81)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:58)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:96)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.Server.doStart(Server.java:282)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1274)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.security.AccessController.doPrivileged(Native Method)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1197)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.reflect.Method.invoke(Method.java:498)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.invokeMain(Main.java:473)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.start(Main.java:615)
16:05:48.741 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.main(Main.java:96)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.phenotips.vocabulary.internal.DefaultVocabularyManager] identified by [role = [interface org.phenotips.vocabulary.VocabularyManager] hint = [default]]
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:394)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:190)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getDependencyInstance(EmbeddableComponentManager.java:363)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:312)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:424)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:214)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 45 common frames omitted
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [role = [interface org.phenotips.vocabulary.Vocabulary] hint = [hpo]]
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:216)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getDependencyInstance(EmbeddableComponentManager.java:352)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:312)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:424)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:392)
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 50 common frames omitted
16:05:48.742 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.phenotips.vocabulary.internal.solr.DefaultSolrVocabularyResourceManager] identified by [role = [interface org.phenotips.vocabulary.SolrVocabularyResourceManager] hint = [default]]
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:394)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:190)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getDependencyInstance(EmbeddableComponentManager.java:363)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:312)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:424)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstanceMap(EmbeddableComponentManager.java:214)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 54 common frames omitted
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: org.xwiki.component.manager.ComponentLookupException: Failed to lookup component [org.phenotips.vocabulary.internal.solr.DefaultSolrCoreContainerHandler] identified by [role = [interface org.phenotips.vocabulary.SolrCoreContainerHandler] hint = [default]]
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:394)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getInstance(EmbeddableComponentManager.java:190)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getDependencyInstance(EmbeddableComponentManager.java:363)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:312)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:424)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:392)
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 59 common frames omitted
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: java.lang.NoClassDefFoundError: org/apache/xml/serializer/TreeWalker
16:05:48.743 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.xalan.processor.TransformerFactoryImpl.newTransformer(TransformerFactoryImpl.java:818)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.Config.copyDoc(Config.java:192)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.Config.<init>(Config.java:144)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.SolrXmlConfig.fromInputStream(SolrXmlConfig.java:130)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.SolrXmlConfig.fromFile(SolrXmlConfig.java:113)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.SolrXmlConfig.fromSolrHome(SolrXmlConfig.java:141)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.CoreContainer.<init>(CoreContainer.java:229)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.apache.solr.core.CoreContainer.<init>(CoreContainer.java:239)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.phenotips.vocabulary.internal.solr.DefaultSolrCoreContainerHandler.initialize(DefaultSolrCoreContainerHandler.java:55)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.InitializableLifecycleHandler.handle(InitializableLifecycleHandler.java:39)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.createInstance(EmbeddableComponentManager.java:322)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:424)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.xwiki.component.embed.EmbeddableComponentManager.getComponentInstance(EmbeddableComponentManager.java:392)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 64 common frames omitted
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: java.lang.ClassNotFoundException: org.apache.xml.serializer.TreeWalker
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:430)
16:05:48.744 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppClassLoader.loadClass(WebAppClassLoader.java:383)
16:05:48.745 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 77 common frames omitted
16:05:49.009 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 2018-01-15 16:05:49.007:WARN:oejw.WebInfConfiguration:Web application not found <https://ci.phenotips.org/job/PhenoTips/org.phenotips$phenotips-navigation-tests/ws/target/package/jetty/../webapps/ctakes>
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 2018-01-15 16:05:49.007:WARN:oejw.WebAppContext:Failed startup of context o.e.j.w.WebAppContext{/ctakes,null},<https://ci.phenotips.org/job/PhenoTips/org.phenotips$phenotips-navigation-tests/ws/target/package/jetty/../webapps/ctakes>
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - java.io.FileNotFoundException: <https://ci.phenotips.org/job/PhenoTips/org.phenotips$phenotips-navigation-tests/ws/target/package/jetty/../webapps/ctakes>
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebInfConfiguration.unpack(WebInfConfiguration.java:505)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebInfConfiguration.preConfigure(WebInfConfiguration.java:71)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppContext.preConfigure(WebAppContext.java:457)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.webapp.WebAppContext.doStart(WebAppContext.java:493)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.bindings.StandardStarter.processBinding(StandardStarter.java:39)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.AppLifeCycle.runBindings(AppLifeCycle.java:186)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.requestAppGoal(DeploymentManager.java:494)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.addApp(DeploymentManager.java:141)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider.fileAdded(ScanningAppProvider.java:145)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider$1.fileAdded(ScanningAppProvider.java:56)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.reportAddition(Scanner.java:615)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.reportDifferences(Scanner.java:540)
16:05:49.010 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.scan(Scanner.java:403)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.Scanner.doStart(Scanner.java:337)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.providers.ScanningAppProvider.doStart(ScanningAppProvider.java:121)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.startAppProvider(DeploymentManager.java:555)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.deploy.DeploymentManager.doStart(DeploymentManager.java:230)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AggregateLifeCycle.doStart(AggregateLifeCycle.java:81)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.AbstractHandler.doStart(AbstractHandler.java:58)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.handler.HandlerWrapper.doStart(HandlerWrapper.java:96)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.Server.doStart(Server.java:282)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1274)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.security.AccessController.doPrivileged(Native Method)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1197)
16:05:49.011 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.reflect.Method.invoke(Method.java:498)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.invokeMain(Main.java:473)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.start(Main.java:615)
16:05:49.012 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.main(Main.java:96)
16:05:49.028 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 2018-01-15 16:05:49.028:WARN:oejuc.AbstractLifeCycle:FAILED SelectChannelConnector at 0.0.0.0:8080: java.net.BindException: Address already in use
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - java.net.BindException: Address already in use
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind0(Native Method)
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:433)
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:425)
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:223)
16:05:49.029 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:74)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.open(SelectChannelConnector.java:187)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.AbstractConnector.doStart(AbstractConnector.java:316)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.doStart(SelectChannelConnector.java:265)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.Server.doStart(Server.java:293)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1274)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.security.AccessController.doPrivileged(Native Method)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1197)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.reflect.Method.invoke(Method.java:498)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.invokeMain(Main.java:473)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.start(Main.java:615)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.main(Main.java:96)
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 2018-01-15 16:05:49.028:WARN:oejuc.AbstractLifeCycle:FAILED org.eclipse.jetty.server.Server at 3e4d40ea: java.net.BindException: Address already in use
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - java.net.BindException: Address already in use
16:05:49.041 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind0(Native Method)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:433)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:425)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:223)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:74)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.open(SelectChannelConnector.java:187)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.AbstractConnector.doStart(AbstractConnector.java:316)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.doStart(SelectChannelConnector.java:265)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.Server.doStart(Server.java:293)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1274)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.security.AccessController.doPrivileged(Native Method)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1197)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.reflect.Method.invoke(Method.java:498)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.invokeMain(Main.java:473)
16:05:49.042 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.start(Main.java:615)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.main(Main.java:96)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - java.lang.reflect.InvocationTargetException
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.lang.reflect.Method.invoke(Method.java:498)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.invokeMain(Main.java:473)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.start(Main.java:615)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.start.Main.main(Main.java:96)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Caused by: java.net.BindException: Address already in use
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind0(Native Method)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:433)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.Net.bind(Net.java:425)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketChannelImpl.bind(ServerSocketChannelImpl.java:223)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at sun.nio.ch.ServerSocketAdaptor.bind(ServerSocketAdaptor.java:74)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.open(SelectChannelConnector.java:187)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.AbstractConnector.doStart(AbstractConnector.java:316)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.nio.SelectChannelConnector.doStart(SelectChannelConnector.java:265)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.server.Server.doStart(Server.java:293)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.util.component.AbstractLifeCycle.start(AbstractLifeCycle.java:64)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration$1.run(XmlConfiguration.java:1274)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at java.security.AccessController.doPrivileged(Native Method)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	at org.eclipse.jetty.xml.XmlConfiguration.main(XmlConfiguration.java:1197)
16:05:49.043 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 	... 7 more
16:05:49.044 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - 
16:05:49.044 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream - Usage: java -jar start.jar [options] [properties] [configs]
16:05:49.044 [Thread-2] ERROR o.x.t.i.XWikiLogOutputStream -        java -jar start.jar --help  # for more information

Results :

Tests run: 0, Failures: 0, Errors: 0, Skipped: 0

[JENKINS] Recording test results


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