The Week Of Monday 19 June 2017 Archives by thread

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Starting: Mon Jun 19 03:57:52 EDT 2017
Ending: Sun Jun 25 23:46:44 EDT 2017
Messages: 139

• [phenotips/phenotips] 2a60f9: PT-3214 Patient data testss   GitHub
  • [phenotips/phenotips] 2a60f9: PT-3214 Patient data testss   GitHub
• [phenotips/phenotips] 1d2064: PT-3214: Write Tests for Patient Data   GitHub
• [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
  • [phenotips/phenotips]   GitHub
• [phenotips/phenotips] 4fa1f2: PT-3214: Write Tests for Patient Data   GitHub
• [JIRA] (PT-3214) Write Tests for Patient Data   Sergiu Dumitriu (JIRA)
  • [JIRA] (PT-3214) Write Tests for Patient Data   Sergiu Dumitriu (JIRA)
• [phenotips/pingback] 80cf48: [maven-release-plugin] prepare release phenotips-p...   GitHub
  • [phenotips/pingback] 80cf48: [maven-release-plugin] prepare release phenotips-p...   GitHub
• [phenotips/phenotips] 243cdf: [misc] Use pingback 1.3   GitHub
• [phenotips/phenotips] fbb114: Add tooltip info-circle placeholder to phenotypes ...   GitHub
• [JIRA] (PC-192) Create a script that would enable upload of vcf file to the corresponding patient   Sasha Andjic (JIRA)
• [phenotips/variant-store] 384de7: [misc] A correct way to compute allele frequency   GitHub
• [JIRA] (MS-11) Incorrect button label for launching mendelian-search from the patient form   Kat Pavlova (JIRA)
  • [JIRA] (MS-11) Incorrect button label for launching mendelian-search from the patient form   Kat Pavlova (JIRA)
• [phenotips/phenotips] 83b159: PT-3214: Write Tests for Patient Data   GitHub
  • [phenotips/phenotips] 83b159: PT-3214: Write Tests for Patient Data   GitHub
• [JIRA] (VS-25) Implement listener to run the Script Service to reindex VCFs when necessary   Kat Pavlova (JIRA)
• [phenotips/mendelian-search-application] 7644a5: MS-11: Fix patient form button label   GitHub
  • [phenotips/mendelian-search-application] 7644a5: MS-11: Fix patient form button label   GitHub
• [phenotips/mendelian-search-application]   GitHub
• [JIRA] (VS-24) Upon save of the patient record, check for changes in selection of VCF   Kat Pavlova (JIRA)
• [JIRA] (VS-28) Improve Exome Sequencing Data UI   Kat Pavlova (JIRA)
  • [JIRA] (VS-28) Improve Exome Sequencing Data UI   Kat Pavlova (JIRA)
• [phenotips/phenotips] ae490e: PT-3240 Removes redundant export checkboxes   GitHub
• [phenotips/phenotips] 3da114: [misc] Use pingback 1.3   GitHub
• [JIRA] (PC-188) The exomiser script should call the variant store removal/upload scripts every time a new tsv is created   Kat Pavlova (JIRA)
• [JIRA] (VS-32) Create custom UI based on the ImageDisplayer for uploading and managing VCFs   veronikaslc (JIRA)
• [JIRA] (VS-20) Delete patient's existing data from the variant-store when a new VCF is uploaded   Kat Pavlova (JIRA)
• [JIRA] (VS-30) Patients lacking consents can still have their VCFs indexed into the variant-store   Kat Pavlova (JIRA)
  • [JIRA] (VS-30) Patients lacking consents can still have their VCFs indexed into the variant-store   veronikaslc (JIRA)
• [JIRA] (VS-1) Tasks cannot be canceled   Kat Pavlova (JIRA)
• [JIRA] (VS-2) Support multi-threaded patient addition   Kat Pavlova (JIRA)
• [JIRA] (PT-3223) Variant Interpretation column lacks human-readable UI strings   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] fd41ca: PT-3223: Render translated values of variant prope...   GitHub
• [phenotips/phenotips] 46b492: Fixed regression causing a whole admin section to ...   GitHub
• [phenotips/phenotips] 7272c3: PT-3236: Reindexing HGNC through REST no longer fa...   GitHub
• [phenotips/phenotips] f372b1: PT-3212: Rename Molecular diagnosis to Final diagn...   GitHub
• [JIRA] (PT-3221) Gene Comments panel is too short, Strategy panel too long   Sergiu Dumitriu (JIRA)
• [JIRA] (PT-3248) Rename "disorders" to "final diagnosis"   Sergiu Dumitriu (JIRA)
• [JIRA] (PT-3265) In the HGNC vocabulary, getTerm is too "eager" to match its input   Sergiu Dumitriu (JIRA)
• [JIRA] (PT-3272) Upon deletion of a pedigree node, its carrier genes are still present in the legend   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] 3839f1: New translations ApplicationResources.properties (...   GitHub
  • [phenotips/phenotips] 3839f1: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 8fa5af: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 16a6e3: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 040082: PT-3230: Modify 'by disease' to 'by final diagnosi...   GitHub
• [phenotips/phenotips] 4b04c6: New translations ApplicationResources.properties (...   GitHub
  • [phenotips/phenotips] 4b04c6: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 4d57d6: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 495718: New translations ApplicationResources.properties (...   GitHub
• [phenotips/phenotips] 6bc2a7: [release] Set the phenotips.version to the right v...   GitHub
• [phenotips/phenotips] b8125f: PT-3081: Added an overloaded save method to the Pa...   GitHub
• [phenotips/variant-store] 57d7ba: VS-33: Outputted allele frequencies should not sho...   GitHub
• [phenotips/variant-store]   GitHub
  • [phenotips/variant-store]   GitHub
• [phenotips/phenotips] 556b68: PT-2391: Clicking N/A on a dropdown prenatal pheno...   GitHub
• [JIRA] (VS-9) Patient data is not deleted from VariantStore when patient record is deleted   veronikaslc (JIRA)
  • [JIRA] (VS-9) Patient data is not deleted from VariantStore when patient record is deleted   veronikaslc (JIRA)
  • [JIRA] (VS-9) Patient data is not deleted from VariantStore when patient record is deleted   veronikaslc (JIRA)
• [phenotips/phenomecentral.org] 30c0a0: [bugfix] Create exomiser output directory if not a...   GitHub
  • [phenotips/phenomecentral.org] 30c0a0: [bugfix] Create exomiser output directory if not a...   GitHub
• [phenotips/phenotips] c759f2: New translations measurementsChartsConfigurations....   GitHub
• [JIRA] (VS-34) Solr documents are read-only and should not be modified directly   Kat Pavlova (JIRA)
  • [JIRA] (VS-34) Solr documents are read-only and should not be modified directly   Kat Pavlova (JIRA)
  • [JIRA] (VS-34) Solr documents are read-only and should not be modified directly   veronikaslc (JIRA)
• [phenotips/variant-store] 0b0b5f: VS-21: Update deprecated method names   GitHub
  • [phenotips/variant-store] 0b0b5f: VS-21: Update deprecated method names   GitHub
• [phenotips/variant-store] 219cd4: VS-21: Provide stable access to deprecated Solrj m...   GitHub
• [JIRA] (VS-21) Replace deprecated methods   Kat Pavlova (JIRA)
  • [JIRA] (VS-21) Replace deprecated methods   Kat Pavlova (JIRA)
  • [JIRA] (VS-21) Replace deprecated methods   Kat Pavlova (JIRA)
• [phenotips/phenotips] 2a28a3: VS-28: Add custom dialogue close button and descri...   GitHub
• [phenotips/phenomecentral.org] 957f57: [bugfix] Pyhton syntax error correction   GitHub
• [phenotips/variant-store] 7611d0: VS-9: Patient data is not deleted from VariantStor...   GitHub
• [phenotips/variant-store] e07884: VS-9: Patient data is not deleted from VariantStor...   GitHub
• [phenotips/phenotips] 4031ed: VS-28: Add custom dialogue close button and descri...   GitHub
• [JIRA] (PT-3199) 'Present' column in exported excel is blank for some cases   Sasha Andjic (JIRA)
• [phenotips/variant-store] 7a64cc: VS-9: Patient data is not deleted from VariantStor...   GitHub
• [phenotips/phenotips] f19ea9: PT-3081: Added an overloaded save method to the Pa...   GitHub
• [phenotips/phenotips] 390ec5: PT-2391: Addressing codereview comments   GitHub
• [phenotips/phenotips] abbf63: VS-28: Remove unwanted ImageDisplayer UI from the ...   GitHub
• [phenotips/variant-store] def20f: VS-9: Patient data is not deleted from VariantStor...   GitHub
• [JIRA] (VS-33) Outputted allele frequencies should not show more than 4 or 5 digits after the decimal place   veronikaslc (JIRA)
• [phenotips/phenotips] 629802: PT-3081: WIP   GitHub
• [phenotips/phenotips] 5103f1: Added support for both apgar times   GitHub
• [phenotips/phenotips] c23dac: PT-3240 Simplify the export dialog   GitHub
• [JIRA] (PT-3273) Gene strategies have a semicolon when exported to Excel   Alexander Lapena (JIRA)
  • [JIRA] (PT-3273) Gene strategies have a semicolon when exported to Excel   Alexander Lapena (JIRA)
  • [JIRA] (PT-3273) Gene strategies have a semicolon when exported to Excel   Alexander Lapena (JIRA)
• [JIRA] (PT-3274) Add Export PDF option to the More Action menu of the Family Page   Sasha Andjic (JIRA)
  • [JIRA] (PT-3274) Add Export PDF option to the More Action menu of the Family Page   Sasha Andjic (JIRA)
• [JIRA] (PT-3275) Improve info text in pedigree legend box   Sasha Andjic (JIRA)
  • [JIRA] (PT-3275) Improve info text in pedigree legend box   Sasha Andjic (JIRA)
  • [JIRA] (PT-3275) Improve info text in pedigree legend box   Sasha Andjic (JIRA)
  • [JIRA] (PT-3275) Improve info text in pedigree legend box   Sasha Andjic (JIRA)
• [JIRA] (PN-197) Make patient IDs searchable in "matching notifications" table search   veronikaslc (JIRA)
• [JIRA] (VS-17) Allow users to hover over "Top Genes in VCF" column names for descriptions of the columns   Kat Pavlova (JIRA)
• [JIRA] (PT-1751) Should be able to specify parents as egg/sperm donor and surrogate in the pedigree   Sasha Andjic (JIRA)
• [phenotips/phenotips] bc946b: PT-3240 Simplify the export dialog   GitHub
• [phenotips/phenotips] 73645f: VS-28: Improve code readability and remove unwante...   GitHub
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Alexander Lapena (JIRA)
• [phenotips/variant-store] 3af865: VS-30: Patients lacking consents can still have th...   GitHub
• [phenotips/variant-store] 7077c0: VS-30: Patients lacking consents can still have th...   GitHub
• [JIRA] (PT-3276) Merge 2 APGAR scores options into one in Push dialog   Sasha Andjic (JIRA)
  • [JIRA] (PT-3276) Merge 2 APGAR scores options into one in Push dialog   Sasha Andjic (JIRA)
• [phenotips/phenotips] 9294cb: PT-3240 Simplify the export dialog   GitHub
• [JIRA] (PC-191) Curate non-standard gene entries   Sasha Andjic (JIRA)
• [JIRA] (VS-18) Sample VCFs have "Freq. in Exac" scores of zero for all variants   Kat Pavlova (JIRA)
  • [JIRA] (VS-18) Sample VCFs have "Freq. in Exac" scores of zero for all variants   Kat Pavlova (JIRA)
• [phenotips/phenotips] dd3a40: PT-3240 Simplify the export dialog   GitHub
• [phenotips/phenotips] 108b5e: PT-3081: JSON Import option in the Patient Record ...   GitHub
• [phenotips/variant-store] 75cfc9: VS-31: Add timestamp to detail the most recent upd...   GitHub
• [JIRA] (VS-31) Add timestamp to detail the most recent update of the Top Genes in VCF table   veronikaslc (JIRA)
• [JIRA] (VS-6) Make "Top Genes in VCF" visible and selectable from edit mode   veronikaslc (JIRA)
• [phenotips/variant-store] 81b76c: VS-31: Add timestamp to detail the most recent upd...   GitHub
• [phenotips/variant-store] fa0cc7: [misc] Relopcating variant store script service fr...   GitHub
• [phenotips/patient-network] 59e135: PN-111: Relopcating variant store script service f...   GitHub
• [phenotips/patient-network] d432d2: PN-111: Relocating variant store script service fr...   GitHub
• [phenotips/variant-store] 2f4257: [misc] Relocating variant store script service fro...   GitHub
• [JIRA] (PT-3277) In the excel export, move Variants between Genes and Genetic data notes   Sergiu Dumitriu (JIRA)
  • [JIRA] (PT-3277) In the excel export, move Variants between Genes and Genetic data notes   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] 0eaac8: [misc] Mark system document as hidden   GitHub
• [phenotips/phenotips] e8e6fd: PT-3240 Simplify the export dialog   GitHub
• [phenotips/phenotips] fc3669: [codestyle]   GitHub

Last message date: Sun Jun 25 23:46:44 EDT 2017
Archived on: Sun Jun 25 23:46:46 EDT 2017

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