The Week Of Monday 15 May 2017 Archives by date

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Starting: Mon May 15 11:36:40 EDT 2017
Ending: Sat May 20 23:53:39 EDT 2017
Messages: 174

• [phenotips/phenotips] c075e1: Visibility Module   GitHub
• [phenotips/phenotips] 04593f: Injects Interface   GitHub
• [phenotips/phenotips] baedcf: PT-3230: Modify 'by disease' to 'by final diagnosi...   GitHub
• [phenotips/phenotips]   GitHub
• [phenotips/phenotips]   GitHub
• [JIRA] (PT-3222) Update documentation: 1.4 REST API Vocabularies   Sasha Andjic (JIRA)
• [JIRA] (PT-3222) Update documentation: 1.4 REST API Vocabularies   Sasha Andjic (JIRA)
• [JIRA] (PT-3222) Update documentation: 1.4 REST API Vocabularies   Sasha Andjic (JIRA)
• [JIRA] (PT-3208) In pedigree editor export JSON the very first patient is marked as proband   Andriy Misyura (JIRA)
• [JIRA] (PT-3208) In pedigree editor export JSON the very first patient is marked as proband   Andriy Misyura (JIRA)
• [phenotips/phenotips] 8b5817: PT-3208: In pedigree editor export JSON the very f...   GitHub
• [JIRA] (PT-3235) Pedigree editor may be broken after a node is deleted   Andriy Misyura (JIRA)
• [JIRA] (PT-3235) Pedigree editor may be broken after a node is deleted   Andriy Misyura (JIRA)
• [phenotips/phenotips]   GitHub
• [phenotips/phenotips] e58624: PT-2224 / PT-3189: Integrated a standardised vocab...   GitHub
• [phenotips/phenotips] baedcf: PT-3230: Modify 'by disease' to 'by final diagnosi...   GitHub
• [phenotips/phenotips]   GitHub
• [phenotips/phenotips] c64e13: PT-3223: Render translated values of variant prope...   GitHub
• [JIRA] (PT-3223) Variant Interpretation column lacks human-readable UI strings   Kat Pavlova (JIRA)
• [phenotips/phenotips] 60f1ba: PT-3223: Simplified variant property render code   GitHub
• [phenotips/phenotips] 52e642: PT-3223: Render translated values of variant prope...   GitHub
• [JIRA] (PT-3223) Variant Interpretation column lacks human-readable UI strings   Kat Pavlova (JIRA)
• [JIRA] (PT-3223) Variant Interpretation column lacks human-readable UI strings   Kat Pavlova (JIRA)
• [JIRA] (PT-3230) Modify "by disease" to "by final diagnosis" in advanced data filter and both export dialogs   Kat Pavlova (JIRA)
• [JIRA] (PT-3230) Modify "by disease" to "by final diagnosis" in advanced data filter and both export dialogs   Kat Pavlova (JIRA)
• [phenotips/patient-network] a23d72: PN-192: Allow pagination of the similarity results   GitHub
• [phenotips/patient-network] fff032: PN-192: Allow pagination of the similarity results   GitHub
• [phenotips/phenotips] e35567: PT-3229: LifeStatusController does not handle life...   GitHub
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3238) Show the vocabulary source next to the version   Sasha Andjic (JIRA)
• [JIRA] (PT-3238) Show the vocabulary source next to the version   Sasha Andjic (JIRA)
• [JIRA] (PT-3239) Unclickable labels for several administrative section elements   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] 5edc6e: PT-3239: Unclickable labels for several administra...   GitHub
• [phenotips/phenotips] 55e3c3: PT-3239: Unclickable labels for several administra...   GitHub
• [JIRA] (PT-3239) Unclickable labels for several administrative section elements   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] 2b638f: [misc] More details about running a local build   GitHub
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove 2 redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove 2 redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3237) Upon successful reindex current version of HPO isn't updated   Sasha Andjic (JIRA)
• [phenotips/phenotips] 2672fb: PT-2224 / PT-3189: Switched to using the first ent...   GitHub
• [JIRA] (PT-3241) Administrators should be able to send email notifications to all/selected users/gorups   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3241) Administrators should be able to send email notifications to all/selected users/groups   Sasha Andjic (JIRA)
• [JIRA] (PT-3241) Administrators should be able to send email notifications to all/selected users/groups   Sasha Andjic (JIRA)
• [phenotips/phenotips] fbb114: Add tooltip info-circle placeholder to phenotypes ...   GitHub
• [phenotips/phenotips] 08ec10: Applied CodeStyle Cleanup   GitHub
• [JIRA] (PT-3216) Add info button to selected phenotypes   Kat Pavlova (JIRA)
• [JIRA] (PT-3216) Add info button to selected phenotypes   Kat Pavlova (JIRA)
• [JIRA] (PT-3215) Add info button to already selected final and clinical diagnoses   Kat Pavlova (JIRA)
• [JIRA] (PT-3215) Add info button to already selected final and clinical diagnoses   Kat Pavlova (JIRA)
• [JIRA] (PT-3216) Add info button to selected phenotypes   Kat Pavlova (JIRA)
• [JIRA] (PT-3171) Condense Work Groups UI in homepage display   Kat Pavlova (JIRA)
• [JIRA] (PT-3182) Mask pedigree and display default warning pop-up if user marks a family record as sensitive   Kat Pavlova (JIRA)
• [JIRA] (PT-3182) Mask pedigree and display default warning pop-up if user marks a family record as sensitive   Kat Pavlova (JIRA)
• [JIRA] (PT-3119) Direct admin users to "Manage Work Groups" instead of "Group Directory"   Kat Pavlova (JIRA)
• [JIRA] (PT-3171) Condense Work Groups UI in homepage display   Kat Pavlova (JIRA)
• [JIRA] (PORG-44) Update Phenotips User Guide   Kat Pavlova (JIRA)
• [JIRA] (PORG-73) Update Getting Started document with 1.3 features   Sasha Andjic (JIRA)
• [JIRA] (PORG-44) Update Phenotips User Guide   Sasha Andjic (JIRA)
• [JIRA] (PT-3221) Gene Comments panel is too short, Strategy panel too long   Sasha Andjic (JIRA)
• [JIRA] (PT-3216) Add info button to selected phenotypes   Alexander Lapena (JIRA)
• [phenotips/patient-network] 2f6e60: PN-111: modified VariantStore backend   GitHub
• [JIRA] (PT-3189) Implement indexing of OncoTree   Alina Gvozdik (JIRA)
• [phenotips/remote-matching] 5a4dc6: Update dependency upon patient-network to 1.2-SNAP...   GitHub
• [phenotips/phenotips] dcf661: Updated README.md: current requirement is Java 1.8...   GitHub
• [phenotips/patient-network] 859c6a: PN-188: Fix up missing translations and escape too...   GitHub
• [phenotips/phenotips] dcf661: Updated README.md: current requirement is Java 1.8...   GitHub
• [phenotips/phenotips]   GitHub
• [JIRA] (PT-2654) Write Tests for the encryption modules   Alexander Lapena (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Alexander Lapena (JIRA)
• [phenotips/variant-store] fb3c07: Update dependencies on phenotips and patient-netwo...   GitHub
• [phenotips/phenotips]   GitHub
• [phenotips/phenotips] 8b4775: PT-2224 / PT-3189: Updated code to compensate for ...   GitHub
• [phenotips/phenomecentral.org] 6b6893: Add active variant-store and inactive mendelian-se...   GitHub
• [phenotips/phenotips] bea7c2: PT-2224 / PT-3189: Updated code to compensate for ...   GitHub
• [JIRA] (MS-1) Evaluate current state of project   Sasha Andjic (JIRA)
• [JIRA] (MS-2) Estimate work needed to complete the project   Sasha Andjic (JIRA)
• [JIRA] (MS-2) Estimate work needed to get MS up and running   Sasha Andjic (JIRA)
• [phenotips/phenotips] 081cbd: PT-2857: Add a generic widget for entering a durat...   GitHub
• [phenotips/phenotips] 78ff1b: PT-2224 / PT-3189: Updated code to compensate for ...   GitHub
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [phenotips/phenotips] 18c7ac: PT-2224 / PT-3189: Updated code to compensate for ...   GitHub
• [JIRA] (PT-3189) Implement indexing of OncoTree   Alina Gvozdik (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PN-98) Patient similarity page UI mockup   Alina Gvozdik (JIRA)
• [JIRA] (PN-98) Patient similarity page UI mockup   Alina Gvozdik (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3240) Remove redundant options from Excel export dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3242) Export to Excel and JSON should use one edialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3242) Export to Excel and JSON should use one edialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3242) Export to Excel and JSON should use one dialog   Sasha Andjic (JIRA)
• [phenotips/phenotips] 812523: [misc] Updated version   GitHub
• [JIRA] (PN-195) Notifications are currently not handling deleted and modified patient records   Sasha Andjic (JIRA)
• [JIRA] (PN-195) Notifications are currently not handling deleted and modified patient records   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [phenotips/phenotips] 51266a: Added missing stylesheet for the popup calendar   GitHub
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [JIRA] (PT-3243) Diagnosis section ideal makeover   Sasha Andjic (JIRA)
• [phenotips/phenotips] 5839fb: Somewhat improved table head layout for measuremen...   GitHub
• [phenotips/phenotips] 6e318d: Remove Export Redundancies   GitHub
• [phenotips/phenotips] d4b16e: Stretch the measurement set table to fill ugly gap   GitHub
• [JIRA] (VS-15) VCF upload is failing   Kat Pavlova (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [phenotips/mendelian-search-application] fd51d5: MS-3: Update dependency on PhenoTips to 1.3   GitHub
• [phenotips/phenomecentral.org] 7a2887: Add active variant-store and inactive mendelian-se...   GitHub
• [phenotips/phenomecentral.org]   GitHub
• [phenotips/phenomecentral.org] d5f386: Introduce dependency upon Mendelian-Search   GitHub
• [phenotips/phenotips] 9456cc: Fixed regression causing a whole admin section to ...   GitHub
• [phenotips/phenotips] 9456cc: Fixed regression causing a whole admin section to ...   GitHub
• [phenotips/phenotips]   GitHub
• [JIRA] (PN-195) Matching table should update matches for changed patients and delete matches for deleted patients.   veronikaslc (JIRA)
• [phenotips/patient-network] fae0e7: PN-195: Matching table should update matches for c...   GitHub
• [phenotips/phenotips] 17c280: PT-2925: Expose XWikiDocument in Patient class (vi...   GitHub
• [phenotips/phenotips] 2a2f3e: PT-2925: Expose XWikiDocument in Patient class (vi...   GitHub
• [JIRA] (PORG-25) Update smoke test for PT 1.3   Sasha Andjic (JIRA)
• [JIRA] (PORG-35) Update PhenoTips » Developer Guide » API   Sasha Andjic (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [phenotips/phenomecentral.org] aa6c37: [exomiser] Setting number of pool_processes to 5   GitHub
• [phenotips/phenomecentral.org] 1ce8a9: [exomiser] Setting number of pool_processes to 5   GitHub
• [phenotips/phenomecentral.org] cf2615: [exomiser] Setting number of pool_processes to 5   GitHub
• [JIRA] (MS-4) Make Mendelian-Search UI fully translatable   Kat Pavlova (JIRA)
• [JIRA] (MS-3) Update Mendelian-Search to PhenoTips 1.3   Kat Pavlova (JIRA)
• [JIRA] (PT-3244) Sometimes user group isn't shown in the push dialog   Sasha Andjic (JIRA)
• [JIRA] (PT-3244) Sometimes user group isn't shown in the push dialog   Sasha Andjic (JIRA)
• [JIRA] (RM-58) Improve codestyle and remove checkstyle/clirr skips on the patient-network dependency   Kat Pavlova (JIRA)
• [JIRA] (PT-3244) Sometimes user group isn't shown in the push dialog   Andriy Misyura (JIRA)
• [JIRA] (MS-5) Make UI gadget load on the new dashboard   Kat Pavlova (JIRA)
• [JIRA] (MS-5) Make UI gadget load on the new dashboard   Kat Pavlova (JIRA)
• [phenotips/patient-network] 14766a: [misc] Fix for disappering phenotypes bug in match...   GitHub
• [JIRA] (PN-192) Allow pagination of the similarity results   veronikaslc (JIRA)
• [JIRA] (PN-195) Matching table should update matches for changed patients and delete matches for deleted patients.   veronikaslc (JIRA)
• [JIRA] (PN-195) Matching table should update matches for changed patients and delete matches for deleted patients.   veronikaslc (JIRA)
• [JIRA] (PN-196) Create migrator to delete matches for deleted patients and update matches for modified patients   veronikaslc (JIRA)
• [JIRA] (MS-5) Make UI gadget load on the new dashboard   Sergiu Dumitriu (JIRA)
• [JIRA] (MS-5) Make UI gadget load on the new dashboard   Kat Pavlova (JIRA)
• [phenotips/phenotips] 8b5817: PT-3208: In pedigree editor export JSON the very f...   GitHub
• [phenotips/phenotips] bf252d: Remove listener that generates XWikiRights Objects   GitHub
• [phenotips/phenotips] 778670: PT-3208: In pedigree editor export JSON the very f...   GitHub
• [JIRA] (PT-3208) In pedigree editor export JSON the very first patient is marked as proband   Sergiu Dumitriu (JIRA)
• [JIRA] (PT-3235) Pedigree editor may be broken after a node is deleted   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips]   GitHub
• [phenotips/phenotips] 6fc659: Don't hide charts in the absence of DoB anymore   GitHub
• [phenotips/phenotips] 63c423: Charts not displayed in view mode due to ignored c...   GitHub
• [phenotips/patient-network] 0ecaf9: PN-195: Matching table should update matches for c...   GitHub
• [phenotips/phenotips] 5527a9: PT-3228: Upgrade to Solr 6.5.1   GitHub
• [JIRA] (MS-5) Make UI gadget load on the new dashboard   Kat Pavlova (JIRA)
• [JIRA] (PT-2860) Pushed record does not get assigned to the chosen remote work group   Andriy Misyura (JIRA)
• [phenotips/patient-network] 17e7d3: PN-196: Create migrator to delete matches for dele...   GitHub
• [phenotips/phenotips] 75f359: PT-2925: Expose XWikiDocument in Patient class (vi...   GitHub
• [phenotips/phenotips] 33e03d: PT-2925: Expose XWikiDocument in Patient class (vi...   GitHub
• [phenotips/phenotips]   GitHub
• [JIRA] (PT-2925) Expose XWikiDocument in Patient class (via Entities API)   Sergiu Dumitriu (JIRA)
• [JIRA] (PT-2860) Pushed record does not get assigned to the chosen remote work group   Sergiu Dumitriu (JIRA)
• [phenotips/phenotips] 5e0437: Services should not throw exceptions. Also, empty ...   GitHub
• [phenotips/phenotips] 97958c: Don't show charts for measurements with empty ages   GitHub
• [phenotips/clinical-text-analysis-extension] 90db31: [misc] Update upstream to 1.3   GitHub
• [phenotips/clinical-text-analysis-extension] 9fc33a: [misc] Update some dependencies.   GitHub

Last message date: Sat May 20 23:53:39 EDT 2017
Archived on: Sat May 20 23:53:41 EDT 2017

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