[phenotips-notifications] [phenotips/phenotips] 7ec8f3: PT-2275: Add ability to import gene data

GitHub noreply at github.com
Sat Dec 26 03:14:07 EST 2015


  Branch: refs/heads/master
  Home:   https://github.com/phenotips/phenotips
  Commit: 7ec8f3370581d0ab282ae96109a16ccfcd0ec49e
      https://github.com/phenotips/phenotips/commit/7ec8f3370581d0ab282ae96109a16ccfcd0ec49e
  Author: Anton Kats <antonkats at gmail.com>
  Date:   2015-12-04 (Fri, 04 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data


  Commit: 4504b60df5553965f78118bdc1a15850e8280828
      https://github.com/phenotips/phenotips/commit/4504b60df5553965f78118bdc1a15850e8280828
  Author: Anton Kats <antonkats at gmail.com>
  Date:   2015-12-07 (Mon, 07 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Adressing comments.


  Commit: 0d579e112fe630cad3fdb3943dda1c0efe8bdd5f
      https://github.com/phenotips/phenotips/commit/0d579e112fe630cad3fdb3943dda1c0efe8bdd5f
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-22 (Tue, 22 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  Merge remote-tracking branch 'origin/pt-2275'


  Commit: fba435ec8d1eeeedf9058965a5edcdb16ec3947a
      https://github.com/phenotips/phenotips/commit/fba435ec8d1eeeedf9058965a5edcdb16ec3947a
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-23 (Wed, 23 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Better way of getting the XWikiContext


  Commit: 1765bd2d4846600485f93fd3051da39f4f679bcb
      https://github.com/phenotips/phenotips/commit/1765bd2d4846600485f93fd3051da39f4f679bcb
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-23 (Wed, 23 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Slight performance improvement


  Commit: 6ed6d4e5406c6ac8406363634779609b8fdff41b
      https://github.com/phenotips/phenotips/commit/6ed6d4e5406c6ac8406363634779609b8fdff41b
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-23 (Wed, 23 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Fixed possible NPE


  Commit: 51df3a998d71369f880cf806b1982685342f070b
      https://github.com/phenotips/phenotips/commit/51df3a998d71369f880cf806b1982685342f070b
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-23 (Wed, 23 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Fixed bug: old genes are kept when updating a patient record from JSON


  Commit: ac6888da349d2de4086a3d56dcac8993c0975c5a
      https://github.com/phenotips/phenotips/commit/ac6888da349d2de4086a3d56dcac8993c0975c5a
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-23 (Wed, 23 Dec 2015)

  Changed paths:
    R components/medsavant-client/pom.xml
    R components/medsavant-client/src/checkstyle/checkstyle-suppressions.xml
    R components/medsavant-client/src/main/java/org/phenotips/integration/medsavant/MedSavantServer.java
    R components/medsavant-client/src/main/java/org/phenotips/integration/medsavant/internal/JsonMedSavantServer.java
    R components/medsavant-client/src/main/resources/META-INF/components.txt
    M components/pom.xml

  Log Message:
  -----------
  [cleanup] Removed unused module


  Commit: 7d17150c1907eb881c75ae4b9b34aa439cd5fe39
      https://github.com/phenotips/phenotips/commit/7d17150c1907eb881c75ae4b9b34aa439cd5fe39
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-24 (Thu, 24 Dec 2015)

  Changed paths:
    M components/patient-data-sharing/push-api/src/main/java/org/phenotips/data/push/internal/DefaultPushPatientService.java
    M components/patient-data-sharing/push-api/src/main/java/org/phenotips/data/push/internal/DefaultPushServerResponse.java
    M components/patient-data-sharing/push-api/src/test/java/org/phenotips/data/push/internal/DefaultPushServerSendPatientResponseTest.java
    M components/patient-data-sharing/receiver-api/src/main/java/org/phenotips/data/receive/internal/DefaultReceivePatientData.java

  Log Message:
  -----------
  [cleanup] Applied codestyle, fixed deprecated code


  Commit: 1eda07ed9878510c991bfce3b26d8c185256dfa8
      https://github.com/phenotips/phenotips/commit/1eda07ed9878510c991bfce3b26d8c185256dfa8
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-25 (Fri, 25 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/test/java/org/phenotips/data/internal/controller/GeneListControllerTest.java

  Log Message:
  -----------
  [cleanup] Removed hamcrest usage that's too complex for what's needed


  Commit: 95b2963e820788f1f5418c5c9fa0be7a9e00e77b
      https://github.com/phenotips/phenotips/commit/95b2963e820788f1f5418c5c9fa0be7a9e00e77b
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-25 (Fri, 25 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/test/java/org/phenotips/data/internal/controller/GeneListControllerTest.java

  Log Message:
  -----------
  [cleanup] Removed useless @Mock


  Commit: aed0ca2a11845769c0018935b15aa42487c68f51
      https://github.com/phenotips/phenotips/commit/aed0ca2a11845769c0018935b15aa42487c68f51
  Author: Sergiu Dumitriu <sergiu at phenotips.org>
  Date:   2015-12-26 (Sat, 26 Dec 2015)

  Changed paths:
    M components/patient-data/impl/src/main/java/org/phenotips/data/internal/controller/GeneListController.java
    M components/patient-data/impl/src/test/java/org/phenotips/data/internal/controller/GeneListControllerTest.java

  Log Message:
  -----------
  PT-2275: Add ability to import gene data
Added unit tests


Compare: https://github.com/phenotips/phenotips/compare/85d5f7c084a2...aed0ca2a1184


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