[phenotips-notifications] [phenotips/phenotips] e8090a: Corrected patent indexing of extended phenotypes

GitHub noreply at github.com
Sun Oct 25 21:48:08 EDT 2015


  Branch: refs/heads/PT-825-phenotype-index
  Home:   https://github.com/phenotips/phenotips
  Commit: e8090a7a6c41405be95601cc2d081d53ba1b1790
      https://github.com/phenotips/phenotips/commit/e8090a7a6c41405be95601cc2d081d53ba1b1790
  Author: Orion Buske <buske at users.noreply.github.com>
  Date:   2015-10-25 (Sun, 25 Oct 2015)

  Changed paths:
    M resources/solr-configuration/src/main/resources/patients/conf/schema.xml

  Log Message:
  -----------
  Corrected patent indexing of extended phenotypes

It appears that the patient index was based on phenotype field naming conventions that were never implemented (e.g., "actual_phenotype" for the entered phenotypes, and "phenotype" for the computed hierarchy).

This updates it to match the current convention, with "phenotype", "prenatal_phenotype", "negative_phenotype" and "negative_prenatal_phenotype" containing the raw data, and "extended_*" versions with the computed hierarchies.


  Commit: 3610133274985d6f0330818ad9a311eac3fbc761
      https://github.com/phenotips/phenotips/commit/3610133274985d6f0330818ad9a311eac3fbc761
  Author: Orion Buske <orion.buske at gmail.com>
  Date:   2015-10-25 (Sun, 25 Oct 2015)

  Changed paths:
    M components/patient-data/indexing/src/main/java/org/phenotips/data/indexing/internal/SolrPatientIndexer.java

  Log Message:
  -----------
  PT-825: index patient phenotype hierarchies


Compare: https://github.com/phenotips/phenotips/compare/e8090a7a6c41^...361013327498


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