[phenotips-notifications] Build failed in Jenkins: PhenoTips-pull-requests #961

ci at phenotips.org ci at phenotips.org
Tue Oct 20 11:57:37 EDT 2015


See <https://ci.phenotips.org/job/PhenoTips-pull-requests/961/changes>

Changes:

[Daniel Gross] PT-1951 Patient measurements - UI improvements

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[INFO] Building PhenoTips - Storage migrators - Attachments - DataBase store 1.3-SNAPSHOT
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[INFO] Building PhenoTips - Storage migrators - Attachments - Filesystem store 1.3-SNAPSHOT
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[INFO] Building PhenoTips - Storage migrators - Attachments - Generic migrator 1.3-SNAPSHOT
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[INFO] Building PhenoTips - NCBI eUtils Services 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ ncbieutils-services ---
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[INFO] Building PhenoTips - NCBI eUtils Services - Java APIs 1.3-SNAPSHOT
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[INFO] Building PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ ncbieutils-services-pubmed-ui ---
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[INFO] Building PhenoTips - Specificity Meter - Java APIs 1.3-SNAPSHOT
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[INFO] Building PhenoTips - MedSavant Integration - Java APIs 1.3-SNAPSHOT
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[INFO] Building PhenoTips - Pedigree - Java APIs 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-pedigree-api ---
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[INFO] Building PhenoTips - Misc - Support for proxy authentication 1.3-SNAPSHOT
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[INFO] Building PhenoTips - Record Locking 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ patient-record-locking ---
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[INFO] Building PhenoTips - Record Locking - API 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-record-locking-api ---
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[INFO] Building PhenoTips - Record Locking - UI - Documents providing record locking functionality 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-record-locking-ui ---
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[INFO] Building PhenoTips - Distribution packages 1.3-SNAPSHOT
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[INFO] Building PhenoTips - HSQLDB Database 1.3-SNAPSHOT
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[INFO] Building PhenoTips - War package 1.3-SNAPSHOT
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[INFO] Building PhenoTips - Standalone Distribution 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-standalone ---
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[INFO] Building PhenoTips - DMG Distribution 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-dmg ---
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[INFO] Building PhenoTips - RPM Distribution 1.3-SNAPSHOT
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[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ phenotips-rpm ---
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[INFO] Reactor Summary:
[INFO] 
[INFO] PhenoTips - Parent POM ............................ SUCCESS [1.977s]
[INFO] PhenoTips - Resource packages ..................... SUCCESS [0.561s]
[INFO] PhenoTips - Jetty ................................. SUCCESS [0.343s]
[INFO] PhenoTips - Jetty Lifecycle Listener - Log Writer . SUCCESS [2.133s]
[INFO] PhenoTips - Jetty Lifecycle Listener - Open Browser  SUCCESS [1.298s]
[INFO] PhenoTips - Jetty Resources ....................... SUCCESS [0.018s]
[INFO] PhenoTips - Solr configuration files .............. SUCCESS [0.308s]
[INFO] PhenoTips - Various Java components ............... SUCCESS [0.007s]
[INFO] PhenoTips - Default administrative account and default rights  SUCCESS [0.074s]
[INFO] PhenoTips - Joda Time Script Service .............. SUCCESS [0.012s]
[INFO] PhenoTips - UI Widgets ............................ SUCCESS [0.005s]
[INFO] PhenoTips - UI Widgets - Documents providing various widgets  SUCCESS [0.009s]
[INFO] PhenoTips - Skin .................................. SUCCESS [0.005s]
[INFO] PhenoTips - Skin - Documents providing the custom Skin  SUCCESS [0.042s]
[INFO] PhenoTips - General navigation .................... SUCCESS [0.006s]
[INFO] PhenoTips - Navigation - Java APIs ................ SUCCESS [0.041s]
[INFO] PhenoTips - OBO to Solr conversion ................ SUCCESS [0.013s]
[INFO] PhenoTips - Data model constants .................. SUCCESS [0.049s]
[INFO] XWiki Platform - Core - Users - Parent POM ........ SUCCESS [0.005s]
[INFO] XWiki Platform - Core - Users - API ............... SUCCESS [0.017s]
[INFO] PhenoTips - Patient data .......................... SUCCESS [0.006s]
[INFO] PhenoTips - Patient data - Java APIs .............. SUCCESS [0.053s]
[INFO] PhenoTips - Vocabularies .......................... SUCCESS [0.006s]
[INFO] PhenoTips - Vocabularies - APIs ................... SUCCESS [0.017s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration  SUCCESS [0.027s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs  SUCCESS [0.026s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services  SUCCESS [0.010s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration  SUCCESS [0.005s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs  SUCCESS [0.034s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - Documents providing services  SUCCESS [0.008s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration  SUCCESS [0.005s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs  SUCCESS [0.041s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Documents providing services  SUCCESS [0.065s]
[INFO] PhenoTips - Solr Access Service ................... SUCCESS [0.006s]
[INFO] PhenoTips - Solr Access Service - Java code ....... SUCCESS [0.041s]
[INFO] PhenoTips - Solr Access Service - Documents providing phenotype and disease suggestions  SUCCESS [0.040s]
[INFO] PhenoTips - Component Manager Registry ............ SUCCESS [0.030s]
[INFO] PhenoTips - Application configuration ............. SUCCESS [0.006s]
[INFO] PhenoTips - Application configuration - Java APIs . SUCCESS [0.097s]
[INFO] PhenoTips - Patient data - Default implementation for the Java APIs  SUCCESS [0.104s]
[INFO] XWiki Translation Manager ......................... SUCCESS [0.014s]
[INFO] PhenoTips - Various Tools ......................... SUCCESS [0.053s]
[INFO] PhenoTips - Patient data - Documents providing the patient class, sheet and display code  SUCCESS [0.039s]
[INFO] PhenoTips - Users and Groups ...................... SUCCESS [0.014s]
[INFO] PhenoTips - Users and Groups - Wiki Documents ..... SUCCESS [0.035s]
[INFO] PhenoTips - Application configuration - Documents providing the configuration classes and their display code  SUCCESS [0.044s]
[INFO] PhenoTips - Patient access rules .................. SUCCESS [0.626s]
[INFO] PhenoTips - Patient access rules - Wiki Documents . SUCCESS [0.384s]
[INFO] PhenoTips - Navigation - Documents providing the homepage and the All Data page  SUCCESS [0.028s]
[INFO] PhenoTips - User - Profile - UI ................... SUCCESS [0.034s]
[INFO] PhenoTips - Data export ........................... SUCCESS [0.006s]
[INFO] PhenoTips - Data export - Spreadsheet Export APIs . SUCCESS [0.028s]
[INFO] PhenoTips - Data export - Documents providing the Export functionality  SUCCESS [0.036s]
[INFO] PhenoTips - Patient measurements .................. SUCCESS [0.017s]
[INFO] PhenoTips - Patient measurements - Java APIs ...... SUCCESS [0.038s]
[INFO] PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI  SUCCESS [0.019s]
[INFO] PhenoTips - Studies ............................... SUCCESS [0.009s]
[INFO] PhenoTips - Studies - Java APIs ................... SUCCESS [0.010s]
[INFO] PhenoTips - Studies - Wiki Documents .............. SUCCESS [0.010s]
[INFO] PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code  SUCCESS [0.007s]
[INFO] PhenoTips - Patient data sharing .................. SUCCESS [0.014s]
[INFO] PhenoTips - Patient data sharing - Communication Protocol Details  SUCCESS [0.015s]
[INFO] PhenoTips - Patient data sharing - Secure data storage API  SUCCESS [0.034s]
[INFO] PhenoTips - Patient data sharing - Push Java APIs . SUCCESS [0.077s]
[INFO] PhenoTips - Patient data sharing - Push Configuration UI  SUCCESS [0.009s]
[INFO] PhenoTips - Specificity Meter ..................... SUCCESS [0.006s]
[INFO] PhenoTips - Specificity Meter - Documents providing the UI  SUCCESS [0.019s]
[INFO] PhenoTips - Diagnosis Suggestion Service .......... SUCCESS [0.025s]
[INFO] PhenoTips - Diagnosis Suggestion Java Code ........ SUCCESS [0.030s]
[INFO] PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions  SUCCESS [0.015s]
[INFO] PhenoTips - Pedigree .............................. SUCCESS [0.005s]
[INFO] PhenoTips - Pedigree - Application Documents ...... SUCCESS [0.008s]
[INFO] PhenoTips - Application interface ................. SUCCESS [0.023s]
[INFO] PhenoTips - Pedigree - JS and CSS Resources ....... SUCCESS [0.112s]
[INFO] PhenoTips - Base War package ...................... SUCCESS [0.927s]
[INFO] PhenoTips - Widget - Java APIs .................... SUCCESS [0.053s]
[INFO] PhenoTips - Skin - Java APIs ...................... SUCCESS [0.053s]
[INFO] PhenoTips - Patient data - Page Objects ........... SUCCESS [0.049s]
[INFO] PhenoTips - Navigation - Testing Page Objects ..... SUCCESS [0.049s]
[INFO] PhenoTips - Navigation - Functional Tests ......... SUCCESS [0.004s]
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest  SUCCESS [0.017s]
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs  SUCCESS [0.056s]
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration  SUCCESS [0.005s]
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs  SUCCESS [0.012s]
[INFO] PhenoTips - Patient data - Data migrations ........ SUCCESS [0.030s]
[INFO] PhenoTips - Patient Data - REST services .......... SUCCESS [0.158s]
[INFO] PhenoTips - Users and Groups - Java APIs .......... SUCCESS [0.026s]
[INFO] PhenoTips - Patient access rules - Java APIs ...... SUCCESS [0.034s]
[INFO] PhenoTips - Patient data - Solr indexing .......... SUCCESS [0.012s]
[INFO] PhenoTips - Patient data - Functional Tests ....... SUCCESS [0.005s]
[INFO] PhenoTips - Extra fields for patient data ......... SUCCESS [0.005s]
[INFO] PhenoTips - Extra fields for patient data - Medication  SUCCESS [0.014s]
[INFO] PhenoTips - Extra fields for patient data - Medication - Java APIs  SUCCESS [0.041s]
[INFO] PhenoTips - Extra fields for patient data - Medication - Documents providing the medication data class and display code  SUCCESS [0.007s]
[INFO] PhenoTips - Security .............................. SUCCESS [0.005s]
[INFO] PhenoTips - Security - Authorization APIs ......... SUCCESS [0.024s]
[INFO] PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components  SUCCESS [0.024s]
[INFO] PhenoTips - Patient access rules - Migrations ..... SUCCESS [0.016s]
[INFO] PhenoTips - Patient data sharing - Receiver Java APIs  SUCCESS [0.013s]
[INFO] PhenoTips - Patient data sharing - Receiver UI .... SUCCESS [0.007s]
[INFO] PhenoTips - Patient measurements - Data migrations  SUCCESS [0.018s]
[INFO] PhenoTips - Patient Measurements - REST services .. SUCCESS [0.610s]
[INFO] XWiki Platform - Core - Users - Wiki .............. SUCCESS [0.004s]
[INFO] PhenoTips - Application configuration - Data migrations  SUCCESS [0.004s]
[INFO] PhenoTips - Storage migrator ...................... SUCCESS [0.004s]
[INFO] PhenoTips - Storage migrators - Java APIs ......... SUCCESS [0.004s]
[INFO] PhenoTips - Storage migrators - Attachments ....... SUCCESS [0.005s]
[INFO] PhenoTips - Storage migrators - Attachments - DataBase store  SUCCESS [0.004s]
[INFO] PhenoTips - Storage migrators - Attachments - Filesystem store  SUCCESS [0.004s]
[INFO] PhenoTips - Storage migrators - Attachments - Generic migrator  SUCCESS [0.003s]
[INFO] PhenoTips - NCBI eUtils Services .................. SUCCESS [0.003s]
[INFO] PhenoTips - NCBI eUtils Services - Java APIs ...... SUCCESS [0.005s]
[INFO] PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions  SUCCESS [0.004s]
[INFO] PhenoTips - Specificity Meter - Java APIs ......... SUCCESS [0.004s]
[INFO] PhenoTips - MedSavant Integration - Java APIs ..... SUCCESS [0.005s]
[INFO] PhenoTips - Pedigree - Java APIs .................. SUCCESS [0.003s]
[INFO] PhenoTips - Misc - Support for proxy authentication  SUCCESS [0.005s]
[INFO] PhenoTips - Record Locking ........................ SUCCESS [0.003s]
[INFO] PhenoTips - Record Locking - API .................. SUCCESS [0.005s]
[INFO] PhenoTips - Record Locking - UI - Documents providing record locking functionality  SUCCESS [0.004s]
[INFO] PhenoTips - Distribution packages ................. SUCCESS [0.004s]
[INFO] PhenoTips - HSQLDB Database ....................... SUCCESS [0.003s]
[INFO] PhenoTips - War package ........................... SUCCESS [0.018s]
[INFO] PhenoTips - Standalone Distribution ............... SUCCESS [0.007s]
[INFO] PhenoTips - DMG Distribution ...................... SUCCESS [0.004s]
[INFO] PhenoTips - RPM Distribution ...................... SUCCESS [0.041s]
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[INFO] BUILD SUCCESS
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[INFO] Total time: 29.847s
[INFO] Finished at: Tue Oct 20 11:57:26 EDT 2015
[INFO] Final Memory: 37M/310M
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Setting status of 8fe9ad349dd912d1b576a321e48625fb0cf97f7d to FAILURE with url https://ci.phenotips.org/job/PhenoTips-pull-requests/961/ and message: 'Build finished.'


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