[phenotips-notifications] Build failed in Jenkins: PhenoTips-pull-requests #787

ci at phenotips.org ci at phenotips.org
Wed Aug 12 17:12:24 EDT 2015


See <https://ci.phenotips.org/job/PhenoTips-pull-requests/787/changes>

Changes:

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

[itaig.phenotips] family-studies - Improve support for family studies

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[...truncated 1727 lines...]
[INFO] PhenoTips - Various Java components ............... SUCCESS [2.212s]
[INFO] PhenoTips - Default administrative account and default rights  SUCCESS [14.144s]
[INFO] PhenoTips - Joda Time Script Service .............. SUCCESS [7.649s]
[INFO] PhenoTips - UI Widgets ............................ SUCCESS [2.246s]
[INFO] PhenoTips - UI Widgets - Documents providing various widgets  SUCCESS [21.584s]
[INFO] PhenoTips - Skin .................................. SUCCESS [2.189s]
[INFO] PhenoTips - Skin - Documents providing the custom Skin  SUCCESS [12.428s]
[INFO] PhenoTips - General navigation .................... SUCCESS [2.294s]
[INFO] PhenoTips - Navigation - Java APIs ................ SUCCESS [4.166s]
[INFO] PhenoTips - OBO to Solr conversion ................ SUCCESS [3.571s]
[INFO] PhenoTips - Data model constants .................. SUCCESS [4.136s]
[INFO] XWiki Platform - Core - Users - Parent POM ........ SUCCESS [2.190s]
[INFO] XWiki Platform - Core - Users - API ............... SUCCESS [16.825s]
[INFO] PhenoTips - Patient data .......................... SUCCESS [2.184s]
[INFO] PhenoTips - Patient data - Java APIs .............. FAILURE [10.978s]
[INFO] PhenoTips - Vocabularies .......................... SKIPPED
[INFO] PhenoTips - Vocabularies - APIs ................... SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration  SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs  SKIPPED
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services  SKIPPED
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration  SKIPPED
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs  SKIPPED
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - Documents providing services  SKIPPED
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration  SKIPPED
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs  SKIPPED
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Documents providing services  SKIPPED
[INFO] PhenoTips - Solr Access Service ................... SKIPPED
[INFO] PhenoTips - Solr Access Service - Java code ....... SKIPPED
[INFO] PhenoTips - Solr Access Service - Documents providing phenotype and disease suggestions  SKIPPED
[INFO] PhenoTips - Component Manager Registry ............ SKIPPED
[INFO] PhenoTips - Application configuration ............. SKIPPED
[INFO] PhenoTips - Application configuration - Java APIs . SKIPPED
[INFO] PhenoTips - Patient data - Default implementation for the Java APIs  SKIPPED
[INFO] PhenoTips - Various Tools ......................... SKIPPED
[INFO] PhenoTips - Patient data - Documents providing the patient class, sheet and display code  SKIPPED
[INFO] PhenoTips - Users and Groups ...................... SKIPPED
[INFO] PhenoTips - Users and Groups - Wiki Documents ..... SKIPPED
[INFO] PhenoTips - Application configuration - Documents providing the configuration classes and their display code  SKIPPED
[INFO] PhenoTips - Patient access rules .................. SKIPPED
[INFO] PhenoTips - Patient access rules - Wiki Documents . SKIPPED
[INFO] PhenoTips - Navigation - Documents providing the homepage and the All Data page  SKIPPED
[INFO] PhenoTips - User - Profile - UI ................... SKIPPED
[INFO] PhenoTips - Data export ........................... SKIPPED
[INFO] PhenoTips - Data export - Spreadsheet Export APIs . SKIPPED
[INFO] PhenoTips - Data export - Documents providing the Export functionality  SKIPPED
[INFO] PhenoTips - Patient measurements .................. SKIPPED
[INFO] PhenoTips - Patient measurements - Java APIs ...... SKIPPED
[INFO] PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI  SKIPPED
[INFO] PhenoTips - Studies ............................... SKIPPED
[INFO] PhenoTips - Studies - Java APIs ................... SKIPPED
[INFO] PhenoTips - Studies - Wiki Documents .............. SKIPPED
[INFO] PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code  SKIPPED
[INFO] PhenoTips - Patient data sharing .................. SKIPPED
[INFO] PhenoTips - Patient data sharing - Communication Protocol Details  SKIPPED
[INFO] PhenoTips - Patient data sharing - Secure data storage API  SKIPPED
[INFO] PhenoTips - Patient data sharing - Push Java APIs . SKIPPED
[INFO] PhenoTips - Patient data sharing - Push Configuration UI  SKIPPED
[INFO] PhenoTips - Specificity Meter ..................... SKIPPED
[INFO] PhenoTips - Specificity Meter - Documents providing the UI  SKIPPED
[INFO] PhenoTips - Diagnosis Suggestion Service .......... SKIPPED
[INFO] PhenoTips - Diagnosis Suggestion Java Code ........ SKIPPED
[INFO] PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions  SKIPPED
[INFO] PhenoTips - Pedigree .............................. SKIPPED
[INFO] PhenoTips - Pedigree - Application Documents ...... SKIPPED
[INFO] PhenoTips - Family Studies ........................ SKIPPED
[INFO] PhenoTips - Family Studies - UI ................... SKIPPED
[INFO] PhenoTips - Application interface ................. SKIPPED
[INFO] PhenoTips - Pedigree - JS and CSS Resources ....... SKIPPED
[INFO] PhenoTips - Base War package ...................... SKIPPED
[INFO] PhenoTips - Widget - Java APIs .................... SKIPPED
[INFO] PhenoTips - Skin - Java APIs ...................... SKIPPED
[INFO] PhenoTips - Patient data - Page Objects ........... SKIPPED
[INFO] PhenoTips - Navigation - Testing Page Objects ..... SKIPPED
[INFO] PhenoTips - Users and Groups - Java APIs .......... SKIPPED
[INFO] PhenoTips - Patient access rules - Java APIs ...... SKIPPED
[INFO] PhenoTips - Security .............................. SKIPPED
[INFO] PhenoTips - Security - Authorization APIs ......... SKIPPED
[INFO] PhenoTips - Family Studies - Java APIs ............ SKIPPED
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest  SKIPPED
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs  SKIPPED
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration  SKIPPED
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs  SKIPPED
[INFO] PhenoTips - Patient data - Data migrations ........ SKIPPED
[INFO] PhenoTips - Patient data - Solr indexing .......... SKIPPED
[INFO] PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components  SKIPPED
[INFO] PhenoTips - Patient access rules - Migrations ..... SKIPPED
[INFO] PhenoTips - Patient data sharing - Receiver Java APIs  SKIPPED
[INFO] PhenoTips - Patient data sharing - Receiver UI .... SKIPPED
[INFO] PhenoTips - Patient measurements - Data migrations  SKIPPED
[INFO] XWiki Platform - Core - Users - Wiki .............. SKIPPED
[INFO] PhenoTips - Application configuration - Data migrations  SKIPPED
[INFO] PhenoTips - Storage migrator ...................... SKIPPED
[INFO] PhenoTips - Storage migrators - Java APIs ......... SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments ....... SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - DataBase store  SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - Filesystem store  SKIPPED
[INFO] PhenoTips - Storage migrators - Attachments - Generic migrator  SKIPPED
[INFO] PhenoTips - NCBI eUtils Services .................. SKIPPED
[INFO] PhenoTips - NCBI eUtils Services - Java APIs ...... SKIPPED
[INFO] PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions  SKIPPED
[INFO] PhenoTips - Specificity Meter - Java APIs ......... SKIPPED
[INFO] PhenoTips - MedSavant Integration - Java APIs ..... SKIPPED
[INFO] PhenoTips - Pedigree - Java APIs .................. SKIPPED
[INFO] PhenoTips - Misc - Support for proxy authentication  SKIPPED
[INFO] PhenoTips - Distribution packages ................. SKIPPED
[INFO] PhenoTips - HSQLDB Database ....................... SKIPPED
[INFO] PhenoTips - War package ........................... SKIPPED
[INFO] PhenoTips - Standalone Distribution ............... SKIPPED
[INFO] PhenoTips - DMG Distribution ...................... SKIPPED
[INFO] PhenoTips - RPM Distribution ...................... SKIPPED
[INFO] PhenoTips - RPM Distribution for RedHat 6.x based distribution  SKIPPED
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[INFO] BUILD FAILURE
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[INFO] Total time: 2:52.556s
[INFO] Finished at: Wed Aug 12 17:10:58 EDT 2015
[INFO] Final Memory: 77M/410M
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[ERROR] Failed to execute goal org.codehaus.mojo:clirr-maven-plugin:2.6.1:check (clirr-check) on project patient-data-api: There were 4 errors. -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :patient-data-api
channel stopped
Setting status of 72026391f6ba92155e15b9156afacc7cdd7332ae to FAILURE with url https://ci.phenotips.org/job/PhenoTips-pull-requests/787/ and message: 'Build finished.'


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