[phenotips-notifications] Build failed in Jenkins: PhenoTips-pull-requests #758

ci at phenotips.org ci at phenotips.org
Thu Aug 6 13:28:33 EDT 2015


See <https://ci.phenotips.org/job/PhenoTips-pull-requests/758/>

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[...truncated 9682 lines...]
[INFO] PhenoTips - Navigation - Java APIs ................ SUCCESS [2.624s]
[INFO] PhenoTips - OBO to Solr conversion ................ SUCCESS [2.119s]
[INFO] PhenoTips - Data model constants .................. SUCCESS [2.908s]
[INFO] XWiki Platform - Core - Users - Parent POM ........ SUCCESS [2.139s]
[INFO] XWiki Platform - Core - Users - API ............... SUCCESS [13.112s]
[INFO] PhenoTips - Patient data .......................... SUCCESS [2.131s]
[INFO] PhenoTips - Patient data - Java APIs .............. SUCCESS [9.717s]
[INFO] PhenoTips - Vocabularies .......................... SUCCESS [2.131s]
[INFO] PhenoTips - Vocabularies - APIs ................... SUCCESS [21.341s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration  SUCCESS [2.468s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - APIs  SUCCESS [19.049s]
[INFO] PhenoTips - Vocabularies - Human Phenotype Ontology integration - Documents providing HPO services  SUCCESS [10.928s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration  SUCCESS [2.550s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - APIs  SUCCESS [8.945s]
[INFO] PhenoTips - Vocabularies - Online Mendelian Inheritance in Man integration - Documents providing services  SUCCESS [8.597s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration  SUCCESS [2.241s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - APIs  SUCCESS [18.779s]
[INFO] PhenoTips - Vocabularies - HUGO Gene Nomenclature Committee (GeneNames) integration - Documents providing services  SUCCESS [8.712s]
[INFO] PhenoTips - Solr Access Service ................... SUCCESS [2.146s]
[INFO] PhenoTips - Solr Access Service - Java code ....... SUCCESS [19.698s]
[INFO] PhenoTips - Solr Access Service - Documents providing phenotype and disease suggestions  SUCCESS [9.345s]
[INFO] PhenoTips - Component Manager Registry ............ SUCCESS [7.727s]
[INFO] PhenoTips - Application configuration ............. SUCCESS [2.056s]
[INFO] PhenoTips - Application configuration - Java APIs . SUCCESS [17.111s]
[INFO] PhenoTips - Patient data - Default implementation for the Java APIs  SUCCESS [2:08.987s]
[INFO] PhenoTips - Various Tools ......................... SUCCESS [22.222s]
[INFO] PhenoTips - Patient data - Documents providing the patient class, sheet and display code  SUCCESS [14.266s]
[INFO] PhenoTips - Users and Groups ...................... SUCCESS [2.148s]
[INFO] PhenoTips - Users and Groups - Wiki Documents ..... SUCCESS [2.483s]
[INFO] PhenoTips - Application configuration - Documents providing the configuration classes and their display code  SUCCESS [2.390s]
[INFO] PhenoTips - Patient access rules .................. SUCCESS [2.104s]
[INFO] PhenoTips - Patient access rules - Wiki Documents . SUCCESS [2.389s]
[INFO] PhenoTips - Navigation - Documents providing the homepage and the All Data page  SUCCESS [12.139s]
[INFO] PhenoTips - User - Profile - UI ................... SUCCESS [6.878s]
[INFO] PhenoTips - Data export ........................... SUCCESS [2.164s]
[INFO] PhenoTips - Data export - Spreadsheet Export APIs . SUCCESS [22.800s]
[INFO] PhenoTips - Data export - Documents providing the Export functionality  SUCCESS [12.020s]
[INFO] PhenoTips - Patient measurements .................. SUCCESS [2.160s]
[INFO] PhenoTips - Patient measurements - Java APIs ...... SUCCESS [16.825s]
[INFO] PhenoTips - Patient measurements - Documents providing the measurements functionality in the UI  SUCCESS [6.746s]
[INFO] PhenoTips - Studies ............................... SUCCESS [2.255s]
[INFO] PhenoTips - Studies - Java APIs ................... SUCCESS [2.600s]
[INFO] PhenoTips - Studies - Wiki Documents .............. SUCCESS [2.645s]
[INFO] PhenoTips - Vocabularies - Documents providing the patient class, sheet and display code  SUCCESS [2.547s]
[INFO] PhenoTips - Patient data sharing .................. SUCCESS [0.698s]
[INFO] PhenoTips - Patient data sharing - Communication Protocol Details  SUCCESS [1.525s]
[INFO] PhenoTips - Patient data sharing - Secure data storage API  SUCCESS [5.182s]
[INFO] PhenoTips - Patient data sharing - Push Java APIs . SUCCESS [15.595s]
[INFO] PhenoTips - Patient data sharing - Push Configuration UI  SUCCESS [8.571s]
[INFO] PhenoTips - Specificity Meter ..................... SUCCESS [2.337s]
[INFO] PhenoTips - Specificity Meter - Documents providing the UI  SUCCESS [2.378s]
[INFO] PhenoTips - Diagnosis Suggestion Service .......... SUCCESS [2.121s]
[INFO] PhenoTips - Diagnosis Suggestion Java Code ........ SUCCESS [25.371s]
[INFO] PhenoTips - Diagnosis Suggestion- Documents providing phenotype and disease suggestions  SUCCESS [9.215s]
[INFO] PhenoTips - Pedigree .............................. SUCCESS [2.168s]
[INFO] PhenoTips - Pedigree - Application Documents ...... SUCCESS [6.714s]
[INFO] PhenoTips - Application interface ................. SUCCESS [12.531s]
[INFO] PhenoTips - Pedigree - JS and CSS Resources ....... SUCCESS [2.969s]
[INFO] PhenoTips - Base War package ...................... SUCCESS [19.935s]
[INFO] PhenoTips - Widget - Java APIs .................... SUCCESS [2.548s]
[INFO] PhenoTips - Skin - Java APIs ...................... SUCCESS [2.557s]
[INFO] PhenoTips - Patient data - Page Objects ........... SUCCESS [4.318s]
[INFO] PhenoTips - Navigation - Testing Page Objects ..... SUCCESS [2.891s]
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest  SUCCESS [2.106s]
[INFO] PhenoTips - Vocabularies - Chemical Entities of Biological Interest integration - APIs  SUCCESS [16.517s]
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration  SUCCESS [2.692s]
[INFO] PhenoTips - Vocabularies - Ethnicity Ontology integration - APIs  SUCCESS [7.944s]
[INFO] PhenoTips - Patient data - Data migrations ........ SUCCESS [10.409s]
[INFO] PhenoTips - Patient Data - REST services .......... SUCCESS [21.175s]
[INFO] PhenoTips - Users and Groups - Java APIs .......... SUCCESS [16.297s]
[INFO] PhenoTips - Patient access rules - Java APIs ...... SUCCESS [16.582s]
[INFO] PhenoTips - Patient data - Solr indexing .......... SUCCESS [9.425s]
[INFO] PhenoTips - Extra fields for patient data ......... SUCCESS [2.262s]
[INFO] PhenoTips - Extra fields for patient data - Medication  SUCCESS [2.267s]
[INFO] PhenoTips - Extra fields for patient data - Medication - Java APIs  SUCCESS [16.243s]
[INFO] PhenoTips - Extra fields for patient data - Medication - Documents providing the medication data class and display code  SUCCESS [6.500s]
[INFO] PhenoTips - Security .............................. SUCCESS [2.066s]
[INFO] PhenoTips - Security - Authorization APIs ......... SUCCESS [13.998s]
[INFO] PhenoTips - Security - Bridge between the old XWiki security interfaces and the new security components  SUCCESS [16.620s]
[INFO] PhenoTips - Patient access rules - Migrations ..... SUCCESS [15.459s]
[INFO] PhenoTips - Patient data sharing - Receiver Java APIs  SUCCESS [9.229s]
[INFO] PhenoTips - Patient data sharing - Receiver UI .... SUCCESS [8.779s]
[INFO] PhenoTips - Patient measurements - Data migrations  SUCCESS [6.759s]
[INFO] XWiki Platform - Core - Users - Wiki .............. SUCCESS [8.180s]
[INFO] PhenoTips - Application configuration - Data migrations  SUCCESS [6.552s]
[INFO] PhenoTips - Storage migrator ...................... SUCCESS [2.241s]
[INFO] PhenoTips - Storage migrators - Java APIs ......... SUCCESS [14.534s]
[INFO] PhenoTips - Storage migrators - Attachments ....... SUCCESS [2.259s]
[INFO] PhenoTips - Storage migrators - Attachments - DataBase store  SUCCESS [6.835s]
[INFO] PhenoTips - Storage migrators - Attachments - Filesystem store  SUCCESS [7.811s]
[INFO] PhenoTips - Storage migrators - Attachments - Generic migrator  SUCCESS [6.757s]
[INFO] PhenoTips - NCBI eUtils Services .................. SUCCESS [2.130s]
[INFO] PhenoTips - NCBI eUtils Services - Java APIs ...... SUCCESS [1.760s]
[INFO] PhenoTips - NCBI eUtils Services - Documents providing PubMed relevant articles suggestions  SUCCESS [2.429s]
[INFO] PhenoTips - Specificity Meter - Java APIs ......... SUCCESS [16.956s]
[INFO] PhenoTips - MedSavant Integration - Java APIs ..... SUCCESS [7.654s]
[INFO] PhenoTips - Pedigree - Java APIs .................. SUCCESS [2.607s]
[INFO] PhenoTips - Misc - Support for proxy authentication  SUCCESS [2.891s]
[INFO] PhenoTips - Record Locking ........................ SUCCESS [2.158s]
[INFO] PhenoTips - Record Locking - API .................. SUCCESS [15.446s]
[INFO] PhenoTips - Record Locking - UI - Documents providing record locking functionality  SUCCESS [6.630s]
[INFO] PhenoTips - Distribution packages ................. SUCCESS [0.897s]
[INFO] PhenoTips - HSQLDB Database ....................... FAILURE [12.230s]
[INFO] PhenoTips - War package ........................... SKIPPED
[INFO] PhenoTips - Standalone Distribution ............... SKIPPED
[INFO] PhenoTips - DMG Distribution ...................... SKIPPED
[INFO] PhenoTips - RPM Distribution ...................... SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 18:02.759s
[INFO] Finished at: Thu Aug 06 13:27:04 EDT 2015
[INFO] Final Memory: 209M/777M
[INFO] ------------------------------------------------------------------------
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[ERROR] Failed to execute goal org.phenotips:phenotips-packager-maven-plugin:1.0-milestone-5:import (default) on project database-zip: Failed to import XAR dependencies: Failed to get the list of components to load: Failed to dynamically load components with annotations: Failed to load component class [org.phenotips.data.internal.controller.AbstractSimpleControllerTestImplementation] for annotation parsing -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :database-zip
channel stopped
Setting status of 1bc39960de99a92e7714e4a5c63c84f27f7ba372 to FAILURE with url https://ci.phenotips.org/job/PhenoTips-pull-requests/758/ and message: 'Build finished.'


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