[phenotips-notifications] Build failed in Jenkins: clinical-text-analysis-extension #125

ci at phenotips.org ci at phenotips.org
Mon Apr 13 11:23:41 EDT 2015


See <https://ci.phenotips.org/job/clinical-text-analysis-extension/125/changes>

Changes:

[michael.kozakov] Add script service

[michael.kozakov] Start connecting UI to backend

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[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-plugins) @ clinical-text-analysis-extension-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-commons-lang3) @ clinical-text-analysis-extension-api ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.3.1:enforce (enforce-no-legacy-dependencies) @ clinical-text-analysis-extension-api ---
[INFO] 
[INFO] --- jacoco-maven-plugin:0.7.2.201409121644:prepare-agent (jacoco-prepare) @ clinical-text-analysis-extension-api ---
[INFO] argLine set to -javaagent:/home/jenkins-agent/workspace/maven-repositories/0/org/jacoco/org.jacoco.agent/0.7.2.201409121644/org.jacoco.agent-0.7.2.201409121644-runtime.jar=destfile=<https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/target/jacoco.exec>
[INFO] 
[INFO] --- maven-remote-resources-plugin:1.5:process (license-resources) @ clinical-text-analysis-extension-api ---
[INFO] 
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ clinical-text-analysis-extension-api ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.2:compile (default-compile) @ clinical-text-analysis-extension-api ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 4 source files to <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/target/classes>
[WARNING] <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/src/main/java/org/phenotips/textanalysis/TermAnnotationService.java>:[50,12] serializable class org.phenotips.textanalysis.TermAnnotationService.AnnotationException has no definition of serialVersionUID
[INFO] 
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ clinical-text-analysis-extension-api ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/src/test/resources>
[INFO] Copying 2 resources
[INFO] 
[INFO] --- maven-compiler-plugin:3.2:testCompile (default-testCompile) @ clinical-text-analysis-extension-api ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @ clinical-text-analysis-extension-api ---
[JENKINS] Recording test results
[INFO] 
[INFO] --- maven-jar-plugin:2.5:jar (default-jar) @ clinical-text-analysis-extension-api ---
[INFO] Building jar: <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/target/clinical-text-analysis-extension-api-1.0-SNAPSHOT.jar>
[INFO] 
[INFO] --- maven-checkstyle-plugin:2.13:check (default) @ clinical-text-analysis-extension-api ---
[INFO] Starting audit...
<https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/src/main/java/org/phenotips/textanalysis/script/TermAnnotationScriptService.java>:50: First sentence should end with a period.
Audit done.

[INFO] There are 1 checkstyle errors.
[ERROR] TermAnnotationScriptService.java[50] (javadoc) JavadocStyle: First sentence should end with a period.
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] PhenoTips - Clinical Text Analysis ................ SUCCESS [11.544s]
[INFO] PhenoTips - Clinical Text Analysis - Java API ..... FAILURE [41.398s]
[INFO] PhenoTips - Clinical Text Analysis - Biolark implementation for the Java APIs  SKIPPED
[INFO] PhenoTips - Clinical Text Analysis - User Interface Components  SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 56.363s
[INFO] Finished at: Mon Apr 13 07:08:28 EDT 2015
[INFO] Final Memory: 63M/150M
[INFO] ------------------------------------------------------------------------
Waiting for Jenkins to finish collecting data
[ERROR] Failed to execute goal org.apache.maven.plugins:maven-checkstyle-plugin:2.13:check (default) on project clinical-text-analysis-extension-api: You have 1 Checkstyle violation. -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoFailureException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :clinical-text-analysis-extension-api
[JENKINS] Archiving <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/biolark/pom.xml> to org.phenotips/clinical-text-analysis-extension-biolark/1.0-SNAPSHOT/clinical-text-analysis-extension-biolark-1.0-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/ui/pom.xml> to org.phenotips/clinical-text-analysis-extension-ui/1.0-SNAPSHOT/clinical-text-analysis-extension-ui-1.0-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/pom.xml> to org.phenotips/clinical-text-analysis-extension-api/1.0-SNAPSHOT/clinical-text-analysis-extension-api-1.0-SNAPSHOT.pom
[JENKINS] Archiving <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/api/target/clinical-text-analysis-extension-api-1.0-SNAPSHOT.jar> to org.phenotips/clinical-text-analysis-extension-api/1.0-SNAPSHOT/clinical-text-analysis-extension-api-1.0-SNAPSHOT.jar
[JENKINS] Archiving <https://ci.phenotips.org/job/clinical-text-analysis-extension/ws/pom.xml> to org.phenotips/clinical-text-analysis-extension/1.0-SNAPSHOT/clinical-text-analysis-extension-1.0-SNAPSHOT.pom
Terminating xvnc.
$ vncserver -kill :14
channel stopped
Killing Xvnc process ID 25283
Setting commit status on GitHub for https://github.com/phenotips/clinical-text-analysis-extension/commit/0a0facb0c8f8319f651404c13a514580cc6d61b7


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