[phenotips-notifications] Build failed in Jenkins: savant #4

ci at cs.toronto.edu ci at cs.toronto.edu
Fri May 17 00:07:12 EDT 2013


See <http://ci.cs.toronto.edu/jenkins/job/savant/4/>

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[INFO] Building Savant - Core 2.0-SNAPSHOT
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[INFO] Building jar: <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.core/target/savant-core-2.0-SNAPSHOT.jar>
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[INFO]                                                                         
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[INFO] Building Savant - Plugin for the Autism Genome Project 2.0-SNAPSHOT
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[INFO] 
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[INFO] Compiling 2 source files to <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/target/classes>
[INFO] -------------------------------------------------------------
[ERROR] COMPILATION ERROR : 
[INFO] -------------------------------------------------------------
[ERROR] <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[55,17] error: package savant.net does not exist
[ERROR] <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[58,29] error: package savant.view.swing.util does not exist
[ERROR] <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[132,19] error: cannot find symbol
[ERROR]   symbol:   class DocumentViewer
  location: class HTTPBrowser
<http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[132,42] error: cannot find symbol
[ERROR]   symbol:   class DocumentViewer
  location: class HTTPBrowser
<http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[152,24] error: cannot find symbol
[ERROR]   symbol:   variable DownloadController
  location: class HTTPBrowser
<http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[154,52] error: method addBookmarksFromFile in class BookmarkController cannot be applied to given types;
[ERROR]   required: File,boolean
  found: File
  reason: actual and formal argument lists differ in length
<http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[161,24] error: cannot find symbol
[ERROR]   symbol:   variable DownloadController
  location: class HTTPBrowser
<http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/src/savant/agp/HTTPBrowser.java>:[164,62] error: cannot find symbol
[INFO] 8 errors 
[INFO] -------------------------------------------------------------
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] Savant - Parent POM ............................... SUCCESS [6.411s]
[INFO] Savant - Core ..................................... SUCCESS [18.929s]
[INFO] Savant - Plugin for the Autism Genome Project ..... FAILURE [1.163s]
[INFO] Savant - Amino plugin ............................. SKIPPED
[INFO] Savant - Chromatogram plugin ...................... SKIPPED
[INFO] Savant - Data plugin .............................. SKIPPED
[INFO] Savant - Diff plugin .............................. SKIPPED
[INFO] Savant - Export plugin ............................ SKIPPED
[INFO] Savant - Gene ontology plugin ..................... SKIPPED
[INFO] Savant - Pathways plugin .......................... SKIPPED
[INFO] Savant - SNP finder plugin ........................ SKIPPED
[INFO] Savant - SQL Datasource plugin .................... SKIPPED
[INFO] Savant - UCSC Datasource plugin ................... SKIPPED
[INFO] Savant - UCSC Explorer plugin ..................... SKIPPED
[INFO] Savant - Plugin for the Thousand Genomes Project .. SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 28.268s
[INFO] Finished at: Fri May 17 00:15:04 EDT 2013
[INFO] Final Memory: 25M/352M
[INFO] ------------------------------------------------------------------------
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.ucsc/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-ucsc/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-ucsc/2.0-SNAPSHOT/savant-plugin-ucsc-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.data/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-data/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-data/2.0-SNAPSHOT/savant-plugin-data-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.thousandgenomes/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-thousandgenomes/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-thousandgenomes/2.0-SNAPSHOT/savant-plugin-thousandgenomes-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.snp/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-snp/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-snp/2.0-SNAPSHOT/savant-plugin-snp-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.agp/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-agp/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-agp/2.0-SNAPSHOT/savant-plugin-agp-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.pathways/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-pathways/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-pathways/2.0-SNAPSHOT/savant-plugin-pathways-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-parent/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-parent/2.0-SNAPSHOT/savant-parent-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.amino/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-amino/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-amino/2.0-SNAPSHOT/savant-plugin-amino-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.sql/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-sql/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-sql/2.0-SNAPSHOT/savant-plugin-sql-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.core/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-core/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-core/2.0-SNAPSHOT/savant-core-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.core/target/savant-core-2.0-SNAPSHOT.jar> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-core/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-core/2.0-20130517.041502-1/savant-core-2.0-20130517.041502-1.jar
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.chromatogram/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-chromatogram/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-chromatogram/2.0-SNAPSHOT/savant-plugin-chromatogram-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.geneontology/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-geneontology/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-geneontology/2.0-SNAPSHOT/savant-plugin-geneontology-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.ucscexplorer/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-ucscexplorer/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-ucscexplorer/2.0-SNAPSHOT/savant-plugin-ucscexplorer-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.diff/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-diff/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-diff/2.0-SNAPSHOT/savant-plugin-diff-2.0-SNAPSHOT.pom
[JENKINS] Archiving <http://ci.cs.toronto.edu/jenkins/job/savant/ws/savant.export/pom.xml> to /var/lib/jenkins/jobs/savant/modules/edu.toronto.cs.savant$savant-plugin-export/builds/2013-05-17_00-06-33/archive/edu.toronto.cs.savant/savant-plugin-export/2.0-SNAPSHOT/savant-plugin-export-2.0-SNAPSHOT.pom
Waiting for Jenkins to finish collecting data
mavenExecutionResult exceptions not empty
message : Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project savant-plugin-agp: Compilation failure
cause : Compilation failure
Stack trace : 
org.apache.maven.lifecycle.LifecycleExecutionException: Failed to execute goal org.apache.maven.plugins:maven-compiler-plugin:2.5.1:compile (default-compile) on project savant-plugin-agp: Compilation failure
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:213)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:153)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:145)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:84)
	at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:59)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.singleThreadedBuild(LifecycleStarter.java:183)
	at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:161)
	at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:320)
	at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:156)
	at org.jvnet.hudson.maven3.launcher.Maven3Launcher.main(Maven3Launcher.java:79)
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
	at java.lang.reflect.Method.invoke(Method.java:601)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launchStandard(Launcher.java:329)
	at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:239)
	at org.jvnet.hudson.maven3.agent.Maven3Main.launch(Maven3Main.java:158)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:100)
	at hudson.maven.Maven3Builder.call(Maven3Builder.java:66)
	at hudson.remoting.UserRequest.perform(UserRequest.java:118)
	at hudson.remoting.UserRequest.perform(UserRequest.java:48)
	at hudson.remoting.Request$2.run(Request.java:326)
	at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
	at java.util.concurrent.FutureTask.run(FutureTask.java:166)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
	at java.lang.Thread.run(Thread.java:722)
Caused by: org.apache.maven.plugin.CompilationFailureException: Compilation failure
	at org.apache.maven.plugin.AbstractCompilerMojo.execute(AbstractCompilerMojo.java:729)
	at org.apache.maven.plugin.CompilerMojo.execute(CompilerMojo.java:128)
	at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:101)
	at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:209)
	... 27 more
channel stopped


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